Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13510g00002 ATGGTGGTGGCGGAGTCTGAGATGAACTCACAAAACGACGATGAATCTTCGATAGAGTTGGAGCAACAGCACGACGTCAACAAGAATCACCCATTCTCTTCATTGGGAAGAGAAGCTTCTTCCATCTACTCCATCACCCTCGACGAGTTCCAACACACGCTATGGGAGAATGGCAAGAACTTTGGGTCCATGAACATGGACGAGTTTCTCAGCAGCATATGGTGTGCAGAAGAAATTCAAATTTTAAACAACAGCAACAGCAGCATCAACGTTAGCAGCTTCTCACTGAATGAAGCTTCCGCAGAAAAAGGGTTGATAAGGAAGCAACCGAGCCTTCCTCGGCAAGGGTCTCTAACACTTCCTGCACCTTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGACAACAACAACGGCAACCACAGAAAAACAACGACAATAACTGTGGAAGCGTTAATAATGATAACAATGCTCAAAATACCGATTCTGCCAGTCGCCAACCTACCTTTGGAGAGATGACTTTGGAGGACTTCTTGATAAAAGCTGGGATAGTTCGTGAACAGTGTGCCATTGCAACGCCAGTTCCAGCTTCTACAAGTCAAAATCAGCATTTGCAGCAGTATGGCTTCTTTCCTAATAACAACCGTACAATGGAGCCTTCTTTTGTCGGAAGGCAGGTGATGGGGCTTGGTGGCGGCGGTTTCGGCGGTAGTGCTGGTGGGAATGTGGTTAGACCACCTTATCAGGCGGTGACTAAGGGTGGTGGTGGGGGTGGTGCAGTTGGACAGTCTTCTGGGTATCCGGCGGCAGTGCCGTCAGCGGTTTGCTTTGGACCGAGGGCGGTGAATGGTGGCGGTGGTTACGAGGCAGTGAGCAACGTGGGAGTGGTGGCGCCGGTGAGCCCGGTTTCGCCGGAGGGGATAGGTACTGGTGAAAATTTTGGTTCCAGATTTGGGATGGACAAAGTTGTGTCAAGAGGGAGAAAGAGGGCGTTTGATGGGCCTGTGGAAAAGGTGGTGGAGAGAAGACAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCCAGAGCAAGAAAACTGGCATACACAGTTGAATTAGAAGCAGAATTGACCCAGTTGAAAGAAGAGAACGCCGAACTTAAACTATCACTGGCTGATCTTGAAAGGAGAAGAAAGCAACAGTCACCTTTTTTGCAGCATTTAGAGGAAGGGAATTGGAGAGTTCAAAACAACCTTCAAAAGGCCAAAAATAAATCGAGATCATTGAGAAGGATCATGAGTTGCCCTTTATGA 1311 0.4813 MVVAESEMNSQNDDESSIELEQQHDVNKNHPFSSLGREASSIYSITLDEFQHTLWENGKNFGSMNMDEFLSSIWCAEEIQILNNSNSSINVSSFSLNEASAEKGLIRKQPSLPRQGSLTLPAPLCRKTVDEVWSEIHKGQQQRQPQKNNDNNCGSVNNDNNAQNTDSASRQPTFGEMTLEDFLIKAGIVREQCAIATPVPASTSQNQHLQQYGFFPNNNRTMEPSFVGRQVMGLGGGGFGGSAGGNVVRPPYQAVTKGGGGGGAVGQSSGYPAAVPSAVCFGPRAVNGGGGYEAVSNVGVVAPVSPVSPEGIGTGENFGSRFGMDKVVSRGRKRAFDGPVEKVVERRQRRMIKNRESAARSRARKLAYTVELEAELTQLKEENAELKLSLADLERRRKQQSPFLQHLEEGNWRVQNNLQKAKNKSRSLRRIMSCPL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13510g00002 436 Pfam bZIP transcription factor 346 397 IPR004827 GO:0003700|GO:0006355
Vium13510g00002 436 SMART brlzneu 342 406 IPR004827 GO:0003700|GO:0006355
Vium13510g00002 436 MobiDBLite consensus disorder prediction 138 174 - -
Vium13510g00002 436 MobiDBLite consensus disorder prediction 135 174 - -
Vium13510g00002 436 Coils Coil 369 396 - -
Vium13510g00002 436 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 349 364 IPR004827 GO:0003700|GO:0006355
Vium13510g00002 436 SUPERFAMILY Leucine zipper domain 346 396 IPR046347 GO:0003700|GO:0006355
Vium13510g00002 436 MobiDBLite consensus disorder prediction 1 21 - -
Vium13510g00002 436 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 344 396 IPR004827 GO:0003700|GO:0006355
Vium13510g00002 436 Gene3D - 344 401 - -
Vium13510g00002 436 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 37 419 IPR043452 GO:0003700|GO:0045893
Vium13510g00002 436 MobiDBLite consensus disorder prediction 1 16 - -
Vium13510g00002 436 CDD bZIP_plant_BZIP46 346 400 - -
Vium13510g00002 436 Coils Coil 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13510g00002 Vium-Chr13510 2273 6302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13510g00002 1 400 bZIP Transcription Factor Family AT2G36270 48.107 1.17e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium13510g00002 bZIP_1 7.9e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13510g00002 K14432 - gmx:100790948 562.377