Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium134g00014 ATGAGGGTGAGTTACCCTCGTTTCTTCTTATTCCTTCTGCTCCTTGCTGTGTTTTGCTTTGCCTCCTTAGCTTCTGGAGCCACTCTTCCACAAGATGAAGTGGAAGCTCTGAAAGATGTAGCTACTACACTTGGGAAGAAGGACTGGGATTTCAGCGTAGATCCTTGCAGTGGAGAACGTAATTGGACATCTGCAGTACAAGTAAAAGGGAGTGAAAATGAATTAAGATGCAATTGCTCTTATAACAATGACACCGTTTGTCATGTCACCAACATAATTTTGAAAGCACAAAATCTCCCAGGCAATCTCCCTCAAGATCTGTTCTGATTGCCTTTCATACAAGAATTTGACGTTAGTCGCAATTACCTGAACGGCTCAATTCCCAAAGAATGGGGCACCACGAAACTTGTCAACATTTCCCTCCTCGGAAATCGATTAACGGGTTCAATACCAAAAGAGATAGCAAACATATCCACTCTTCAAAGTTTGGTCGTGGAGGCCAATCAACTATCTGGAGCTCTTCCTCTTGAGCTTGGGAATCTACCCCAAATTCAAAGACTGCTACTTTCCTCTAACAATTTTACTGGAGAGTTACCTGAAACATTGAACAAGCTCACTACATTGCAGGATATTCGACTTGGGGACAATCAGTTTTCTGGGAATATACCTGATTTTATTCAAAGTTGGACAAGTCTCCAAAAACTAGTGATTCAAGGGAGTGGATTCGATGGGCCTCTTCCTTCTGGAATCTCACTTCTGAAAAACTTAACTGACTTGAGAATTAGTGATCTGAATGGGTCTGAACAGTCAACTTTTCCACAACTTAATAACATGACGTTGAAATATCTGATTTTGAGGAATTGCAACATCAATGGAACTCTACCAACATATCTTGGGACAATGACAACCTTGAAAAACTTAGACCTCAGCTTTAACAAATTGACTGGACCAATTCCAAGTGACTATGAAGCCCTGAGAAATGTTGATAACATATATTTAACTGGAAATCTTCTCAATGGAGAAGTACCTGCATGGACAGAGAAAGCTGACAATATAGATATTTCATATAACAACTTCACAATCCAAGGGAGTCCTACATGTCAGAATGGAAATGTGAACTTGTTTTCTAGCTCCCAAACGCACAATAACTCAGGAACAGCTGCTTGCCTGGGAAACAATGTCTGTCAGAAAAGCTCATACTCCCTTCATATAAATTGTGGTGGAAAGATGATAACAGAAGGCAAAAGCACATATGATGATGATTTAGATAATGGAAGTCCAGCTAGATTTCACCGAAGTGGATCAAAAAATTGGGCATTTATCACTACTGGTAACTTTATGGATAATGAGGCTGGCCACTATTCTATCTCGCAAAATAAATCATCTCTTTCTGTGGACAAAGCTGATCTCTACATGGATGCACGAGTTTCTCCCACTTCTCTAACTTACTATGGATTTTGCTTGGGAAATGGAAACTACACAGTTAATCTACATTTTGCAGAAATCATGTTTATTAATGATCAAACATTTAACAGTTTAGGAAGACGAGTATTTGACATCTATATTCAGGGAGAGCTGGTGCAGAAGGACTTCAATATTGTAGAAGAAGCAGGAGGAATTGGTAAAGCAATCAAAAAACCCTTCACTGCAGTTGTGAGTAATAGTACTTTGGAGATACGTTTGTATTGGGCTGGAAAAGGGACAACTAGTCTCCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATACAAGTGGAACCTAACTTTACACCACCCTCAGAAAATGGAAGTAGCATATCAGCAGGAGCTGTGGCTGGAATTGTGGTTGCAGTAGCAGTAGTTATCATCATTGTACTTGGTATTCTTTGGTGGAAAGGATGTCTAGGAAAGAAAAATTCTTTAGAAAAAGAGATAAGGAGTTTAGACCTGCGAACCGGTTTGTTTTCTTTAAGAGAAATCAAAGTAGCAACAAACAACTTTGATGCTGCAAATAAGATTGGAGAAGGAGGATTTGGACCTGTGTACAAGGGATGTCTATCAGATGGAACACTAGTAGCAGTGAAGCAACTTTCTTCTAAATCAAAGCAAGGAAATCGTGAGTTTATAACAGAGATAGGCATGATTTCTGCTTTGCAACATCCTTGTCTTGTTAAACTTTATGGATGCTGTGTGGAGGGTGATCAACTCTTATTGGTATATGAATATATGGAAAACAATAGCCTTGCTCGTGCTTTATTTGGACCTGAAGAACACCAAATAAGATTGGATTGGGCAACAAGATACAAGATATGTATTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCATAGAGACATCAAGACCACTAATGTGTTGCTTGATAAAGATCTCAACCCAAAGATATCGGACTTTGGTTTGGCCAAACTGGATGAGGAAGAAAATACTCATATTAGCACCCGAATAGCTGGAACATATGGATATATGGCTCCAGAATATGCTATGCATGGTTATTTGACTGATAAAGCAGACGTCTATAGCTTTGGAGTTGTTGTCTTGGAAATTATAAATGGAAGGAACAATACCATTCACCGTCCAAAAGAACAATCATTCTCCATTCTTGAATGGGCAAATCTGTTGAAAGAGAAAGGTGATCTAATGGAGCTAGTTGATAGAAGATTGGGCACAGACTTCAACAAAGAGGAGGTGTTAGTGTTGATAAGGGTGGCTCTGTTGTGCACGAATATTACTACACAACGTAGGCCAAACATGTCATCAGTGGTAAGCATGCTGGAAGGAAGAACTGTTATTGAGGAAGTGTTTTCAGAGGAAAATGATTTGGAGGAGAAGAAGATGGAGAAAATGAGGCAATACTACCAAGAGTTGAGTATCTCAAAGGATGAGCAATGGACTTCCTCATCTACTTCTGCAGCGGATCTTTATCCTGTAAACATCGATTCTTCTTACTTGCAAAAGAGAGGTTAG 2988 0.3939 MRVSYPRFFLFLLLLAVFCFASLASGATLPQDEVEALKDVATTLGKKDWDFSVDPCSGERNWTSAVQVKGSENELRCNCSYNNDTVCHVTNIILKAQNLPGNLPQDLFXLPFIQEFDVSRNYLNGSIPKEWGTTKLVNISLLGNRLTGSIPKEIANISTLQSLVVEANQLSGALPLELGNLPQIQRLLLSSNNFTGELPETLNKLTTLQDIRLGDNQFSGNIPDFIQSWTSLQKLVIQGSGFDGPLPSGISLLKNLTDLRISDLNGSEQSTFPQLNNMTLKYLILRNCNINGTLPTYLGTMTTLKNLDLSFNKLTGPIPSDYEALRNVDNIYLTGNLLNGEVPAWTEKADNIDISYNNFTIQGSPTCQNGNVNLFSSSQTHNNSGTAACLGNNVCQKSSYSLHINCGGKMITEGKSTYDDDLDNGSPARFHRSGSKNWAFITTGNFMDNEAGHYSISQNKSSLSVDKADLYMDARVSPTSLTYYGFCLGNGNYTVNLHFAEIMFINDQTFNSLGRRVFDIYIQGELVQKDFNIVEEAGGIGKAIKKPFTAVVSNSTLEIRLYWAGKGTTSLPFRSVYGPLISAIQVEPNFTPPSENGSSISAGAVAGIVVAVAVVIIIVLGILWWKGCLGKKNSLEKEIRSLDLRTGLFSLREIKVATNNFDAANKIGEGGFGPVYKGCLSDGTLVAVKQLSSKSKQGNREFITEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEHQIRLDWATRYKICIGIARGLAYLHEESRLKVVHRDIKTTNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVVLEIINGRNNTIHRPKEQSFSILEWANLLKEKGDLMELVDRRLGTDFNKEEVLVLIRVALLCTNITTQRRPNMSSVVSMLEGRTVIEEVFSEENDLEEKKMEKMRQYYQELSISKDEQWTSSSTSAADLYPVNIDSSYLQKRG 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium134g00014 995 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Vium134g00014 995 SUPERFAMILY Protein kinase-like (PK-like) 645 937 IPR011009 -
Vium134g00014 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Vium134g00014 995 Pfam Malectin domain 401 584 IPR021720 -
Vium134g00014 995 SMART serkin_6 661 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium134g00014 995 Gene3D - 398 589 - -
Vium134g00014 995 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 589 - -
Vium134g00014 995 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 944 - -
Vium134g00014 995 ProSiteProfiles Protein kinase domain profile. 661 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium134g00014 995 Gene3D Ribonuclease Inhibitor 55 397 IPR032675 -
Vium134g00014 995 Gene3D Phosphorylase Kinase; domain 1 628 736 - -
Vium134g00014 995 SUPERFAMILY L domain-like 77 344 - -
Vium134g00014 995 Coils Coil 938 958 - -
Vium134g00014 995 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Vium134g00014 995 Gene3D Transferase(Phosphotransferase) domain 1 737 950 - -
Vium134g00014 995 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 961 - -
Vium134g00014 995 CDD STKc_IRAK 667 934 - -
Vium134g00014 995 Pfam Protein kinase domain 664 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium134g00014 995 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 33 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium134g00014 Vium-Chr134 102479 113067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium134g00014 23 980 Receptor kinase-like Gene Family AT1G53420 55.955 0.0 1033
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium134g00014 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium134g00014 - - gmx:732563 1592.4