LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium134g00013	ATGAGTAACCACTGTTTCTTCTTCTTCTTTATTGCTTCCTTTTGCTTTGCCTCCTTTGCTTCTGGAGCCACTCTGGCTCAGGATGAAGTGGAAGCTCTGGAAGATATAGGTAAGACAGTTGGGAAGGTTTGGGATTTCAGCGTAGATCCATGCACTGGAGAAAGAAATTGGTCAACGAATGATAAAAATAATGTCACATGCAACTGTGACGGTCCCAACGGAACCGTCTGCCATGTCACCCGCATAATTTTGAAAGAACAAAATCTTCCGGGTACGCTCCCGCGGAATCTATTCAAGTTGCCTTACCTTCAAGAACTTGATCTTTCTCGCAACTACCTTAATGGCACAATTCCTAAAGAATGGGGTTCCACAAAACTTGTCACCATTTCCCTCCTTGCAAATCGATTGACAGGTGAAATACCAACCGAGATAACAAATATATCCACTCTTTTAGATTTGAACTTGGAAGCCAATCAATTTTCTGGAATTCTTCCTCTTGAGCTTGGTAATTTAACCCAAATTCTAAGATTGTTACTTAACTCCAATAATTTTACTGGAGAACTACCAATCTCACTGGCCAGACTTTCTAAATTACTAGATTTTCGAATAGGGGACAATCAATTTTCTGGGAAGATACCTGACTTTATTCATCAAAATATGAAAAATCTATCGACATTGAGGATTGAAGGGAGTGGATTAAGTGGGCCAATTCCTTCTGAAATTTCACAACTGCAAAACTTAACTGACTTGAGAATTAGTGATCTAAGAGGATCTGAAACTTCAACTTTTCCTCCTCTTGATAAAATGAACTTACAGTATTTGATTCTGAGAAATTGTAACATCATTGGAGATTTACCCGAATTTCTTGGAACAATGACAAGTTTAAAGGACAACTTAGACCTCAGCTTTAACAAGTTCACTGGACCAATTCCGGATGCCTATGAGACCAGAGCAAGAAAAGTGAAAAACGTTTATTTATCCGGAAATCTTCTGAATGGAACCGTGCCTTCATGGATAGAGCATGCAAAGCCAATAGATATTTCATATAACAACTTAAACATCACAAGCCAAGAGAGTGCGACTTGTAATCAAGTAGGAAGGAACTTATTTGCTAACTCCATCACGAATGGCTCAGGAGAAGATGCTTGCTTGGAAGGTTATACATGTTCACAACTGTTATACAATCTTCATATAAACTGTGGTGGAAAGGAGGTCTTAGTCAATAAAAGCACATATGATGATGATGTAGCTGATGGAGGTGACGTTAGATTTCTTTGGAATAGAAACAGAAATTGGGCAGTTAGCACTACTGGTAACTTTATGAATAATGACAACGAAGCGGGAAAGCATTTAGTCTCAAACAAATCTGTGCTTTCTATAGAGAATGTTGATCTATACATGACTGCACGAGCTTCTCCCATTTCATTGACTTATTATGGATTTTGCTTGGGAAATGGAAACTACACAATATTTCTGCATTTTGCTGAAATTGTGTTCACTGATGATCAAACATTTAGCAGCTTAGGAAGACGAGTGTTTGACATCTACATTCAGGGAGAACTAGTGAAGGAGGGCTTCAATATTGCAGAAGAAGCCGGAGGTAATGGTAAGGCAATCACAAAAACTTTTAGAGCTGTTGTGAGCAGTAATACCTTGAAGATACGACTGAATTGGGCTGGAAAAGGGACAACTGCACTCCCATATAAATCAGTATATGGTCCTCTTATATCAGCTATAACTGTGAACTCAGATAATCCACCTCCCATGCCCAGTAGCATATCAGTAGGCGTTGTGGTTGGAATTGTGGTTGCAGTGGTAGTCGTTATCATCCTTATGTTTGGTAGACTTTGGTGGAAATGCTGCTTAAGGAAGAAAAGTTCCTTAGAAATCGAGCTAAGAGGTTTGGAACTACGAACAGGTGTATTCACTTTAAGACAGATAAAAGTGGCAACAAACAACTTCGCTGAGGAGAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTCTATCTGATGGGACATTGATAGCAGTAAAACTACTCTCTTCTAAATCAAGACAAGGGAATCGAGAGTTCTTAAATGAGATAGGAATGATTTCTGCTTTGCAGCATCCTCATCTTGTTAAACTATATGGATGCTGTGTGGAGGGTGATCAACTCTTATTGGTATATGAATATATGGAAAACAATAGCCTTGCTCGTGCTTTATTTGGACCTGAAGAACACCAAATAAGATTGGATTGGGCAACAAGATACAAGATATGTATTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCATAGAGACATCAAGACCACTAATGTGTTGCTTGATAAAGATCTCAACCCAAAGATATCAGACTTTGGTTTGGCCAAACTGGATGAGGAAGAAAATACTCATATTAGCACCCGAATAGCTGGAACATATGGATATATGGCTCCAGAATATGCCATGCATGGTTACTTGACCGATAAAGCGGATGTCTATAGCTTTGGAATTGTTGTGTTGGAAATTATAAATGGAAGGAACAATATCATTCATCGACAAAACGAAGAATCATTCTCAATTCTTGATTGGGCACACATGTTGAAAACAAAAGGTGATCTAATGGAGCTAGTGGATAGGAGATTGGGGTCAGACTTGAAGAAAGAGGAGGTATTGGTGGCTATAAAAGTGGCTCTTTTATGCACTCAGGTGACTACAACACTTAGGCCAACAATGTCATCAGTAGTGAGCATATTGGAAGGTAAAAGTGTTGTTGATGAAGTGGTAACAGAAGCAAGTGAGGTGTTGGATGAGAAAAGAATGGAGGCAATGAGAAAATATTACAGTGAGCTAAGTATAGAAGTGCCATGGACTGCTTCATCTACATCTGCATCAGATCTTTATCCAACACATCTTGATTCATCTTTTTTGGACAAGAGAAATTATCTCTAA	2970	0.3892	MSNHCFFFFFIASFCFASFASGATLAQDEVEALEDIGKTVGKVWDFSVDPCTGERNWSTNDKNNVTCNCDGPNGTVCHVTRIILKEQNLPGTLPRNLFKLPYLQELDLSRNYLNGTIPKEWGSTKLVTISLLANRLTGEIPTEITNISTLLDLNLEANQFSGILPLELGNLTQILRLLLNSNNFTGELPISLARLSKLLDFRIGDNQFSGKIPDFIHQNMKNLSTLRIEGSGLSGPIPSEISQLQNLTDLRISDLRGSETSTFPPLDKMNLQYLILRNCNIIGDLPEFLGTMTSLKDNLDLSFNKFTGPIPDAYETRARKVKNVYLSGNLLNGTVPSWIEHAKPIDISYNNLNITSQESATCNQVGRNLFANSITNGSGEDACLEGYTCSQLLYNLHINCGGKEVLVNKSTYDDDVADGGDVRFLWNRNRNWAVSTTGNFMNNDNEAGKHLVSNKSVLSIENVDLYMTARASPISLTYYGFCLGNGNYTIFLHFAEIVFTDDQTFSSLGRRVFDIYIQGELVKEGFNIAEEAGGNGKAITKTFRAVVSSNTLKIRLNWAGKGTTALPYKSVYGPLISAITVNSDNPPPMPSSISVGVVVGIVVAVVVVIILMFGRLWWKCCLRKKSSLEIELRGLELRTGVFTLRQIKVATNNFAEENKIGEGGFGPVYKGCLSDGTLIAVKLLSSKSRQGNREFLNEIGMISALQHPHLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEHQIRLDWATRYKICIGIARGLAYLHEESRLKVVHRDIKTTNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIINGRNNIIHRQNEESFSILDWAHMLKTKGDLMELVDRRLGSDLKKEEVLVAIKVALLCTQVTTTLRPTMSSVVSILEGKSVVDEVVTEASEVLDEKRMEAMRKYYSELSIEVPWTASSTSASDLYPTHLDSSFLDKRNYL	989

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium134g00013	989	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	730	937	-	-
	Vium134g00013	989	CDD	STKc_IRAK	660	927	-	-
	Vium134g00013	989	Gene3D	-	394	585	-	-
	Vium134g00013	989	Gene3D	Phosphorylase Kinase; domain 1	618	729	-	-
	Vium134g00013	989	FunFam	Probable LRR receptor-like serine/threonine-protein kinase RFK1	31	188	-	-
	Vium134g00013	989	Gene3D	Ribonuclease Inhibitor	26	265	IPR032675	-
	Vium134g00013	989	Pfam	Malectin domain	395	579	IPR021720	-
	Vium134g00013	989	SMART	serkin_6	654	924	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium134g00013	989	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	623	729	-	-
	Vium134g00013	989	ProSiteProfiles	Protein kinase domain profile.	654	906	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium134g00013	989	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	776	788	IPR008271	GO:0004672\|GO:0006468
	Vium134g00013	989	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	393	584	-	-
	Vium134g00013	989	SUPERFAMILY	Protein kinase-like (PK-like)	639	933	IPR011009	-
	Vium134g00013	989	Gene3D	Transferase(Phosphotransferase) domain 1	730	942	-	-
	Vium134g00013	989	Pfam	Protein kinase domain	655	878	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium134g00013	989	SUPERFAMILY	L domain-like	45	357	-	-
	Vium134g00013	989	Gene3D	Ribonuclease Inhibitor	266	376	IPR032675	-
	Vium134g00013	989	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	13	955	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium134g00013	Vium-Chr134	81416	98336	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium134g00013	19	981	Receptor kinase-like Gene Family	AT1G53420	53.327	0.0	954

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium134g00013		Pkinase	1.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium134g00013	-		-	gmx:732563	1373.99