Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium134g00012 ATGACCAAGATGCGGTTTGTGATGTCTTCAAGCTCCAAGCATGTCTCCATCTTCTTCACTTTTTGCTTTCTGGCTTTGGATCACTTCCAACACTTTGGATCTAATGCTCAACTCATACCAAAAGATGAAGTTAAAATACTACAAACAATATCAGACAAGGTAGAGAACTTGAATTGGAGAGTTACACAAGGTTCCTGCCAAGAGGGTAGAGGGTTTGATAACAGGAAGATTTCAAGGGATGAGGATCAAATCATAAGGAATGTAACATGCAATTGTTCTTTCAACAATGACACTGTTTGCCATGTGACATCCGTTGCACTCAAGGGTATCGATTTATCTGGACCTTTACCGGATGAATTTGGAAATCTAACTCGACTGAAAACACTTGATCTCACTCGGAATTATTTCAATGGCTCAATTCCAAAAAGCCTTGGACGCCTCTCATCAGTTGAAATTCTGTCACTTCTGGGAAATCGCTTTACTGGTTCAATTCCTTCAGAAATTAGTGATATGACTAGTCTGCAAGAACTGAACTTGGAAGATAATCAACTTGAAGGACATCTTCCCCCGAGCCTTGGAAAAATGAGCAACTTACAGAAATTACTTCTCTCTGCAAATAATTTCACAGGGACAATACCAGAAGCATATGGAAAACTCAAGAATCTCACTCAATTTAGGATAGATGGGAGCACTTTGTCCGGGAAGATACCCAGTTTTATAGGGAACTGGACCAAACTTGATAGATTGGATTTGCAGGGCACATCCTTGGAAGGTCCAATTCCTTCTGTCATATCTGAATTGATCTATTTGACAGAATTGAGAATATCTGATTTGAAGGGACCAACAATGACATTTCCTAATCTGACGAATTTGAATCTCTTGCAAAGACTAGAATTGAGGAATTGCTTAATCACTGGTCAAATTCCTAGTTACATTGGAGAAAAGCAAAATTTAAAAACTCTAGATCTGAGCTCCAACATGCTGACTGGTCCAATTCCAGATTCATTTCAGGACCTGGAAAAAATAAATTACTTGTTCCTGACTAACAATTCTCTAAGTGGACGAATTCCTGATTGGATACAAACCTTAAAACAGAAGATTGATTTATCATTGAACAATTTTAGTGAGAGTTTTTCACATTTTTGCCAGGTCTTGGATGTGAACTTAGCTTCCAGCCTCTCTCCCTCAGCAAACACTTCATCGTCTTGTTTAAAGAAAGGCCAACCTTGTTCTGGGAAACCCCGGTTTCATTCACTGTTCATAAACTGTGGAGGACCTGAAATAGAATTTGAGGGCAATGAATATGAAGCCGACCTCAATCTACGAGGCATATCAAACTATGTTGTTAGTGACGATGGCAAATGGGCATATAGCAGCACTGGAGTATATCTAGGAAGGGATAAGGCTGATTATGTTGCAAACAATCAGTTTAATCTGAAAATTAATGGCTCTGAATACTACCATACAGCCCGCATGGCCCCACTATATCTTCATTATTATGGTCTTTGTATGCTGAATGGAAATTATAAAGTGAAACTTCATTTTGCTGAGATAACATTCTCTGATGACAATTCATTTACCAGCCTTGGAAAGCGTGTGTTTGATGTTTCAATCCAAGGTTTTAAATATTTGAAAGATTTTAACATTGTGGAAGAAGCTGGTGGAGTTGGTAAGGGAATCACTAAGGAGTTTAATGTGAATGTTACCCACAACACCTTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCTATTCCTGAAAGAGGTATATATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTTAAAGTTCCTTCACATGGACTGTCTACTGGAGCAATTGCTGGAATTGTGGTTGGGATATGTGTGTTCATCATATTGATACTCTTTGCACTTTGGAAGATGGGTTTTCTATGTGGGAAAGATGAAACAGACCAAGAACTTCTAGGTTTGAAGACAGGTTATTTCAGTTTAAGACAGATTAAAGCTGCTACTGATAACTTCGATCCTGCAAATAAAATAGGTGAAGGAGGCTTTGGACCAGTATACAAGGGTGTGCTGTCAGACGGTGCTGTGATAGCTGTTAAGCAGCTTTCATCTAAATCAAAGCAAGGGAATCGCGAATTCATCAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAACTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTTCTAGTATATGAATACATGGAGAACAATAGTCTTGCTCGTGCACTGTTTGGTAAAGAGCATGAGAGGATGCAATTGGACTGGCCCAGAAGAATGAAGATTTGTGTGGGGATTGCAAAGGGATTAGCTTATCTCCATGAGGAGTCAAGGTTGAAAATAGTACACAGGGATATTAAAGCAACCAATGTCTTACTTGATAAGCATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAACTTGACGAAGAAGAGAATACCCATATCAGTACAAGAATAGCTGGGACAATTGGTTACATGGCTCCAGAGTATGCTATGCGGGGTTACTTGACTGATAAAGCAGATGTCTATAGCTTTGGTATTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTGTATCTTTTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGATTTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCTCAGAAGAGGCCATGAGAATGCTACAGTTAGCACTCCTTTGTACCAATCCTTCTCCCACTCTTAGACCACCTATGTCATCGGTAGTGAGCATGCTTGAGGGAAAAACTCCAATTCAAGCACCACCAATAATCAAAGGTAGTGACAATGCACAAGATGCAAGGTTTAAAGCCCTTGAGTTCTTATCACAAGACAGCCAAACTCATGTCTCTTCTGCTTTCTCACAAGATAGTATAGAGCAAAGAAGCAAGTCAATGGGGGGACCATGGGTTGATTCCACCATATGA 3018 0.3989 MTKMRFVMSSSSKHVSIFFTFCFLALDHFQHFGSNAQLIPKDEVKILQTISDKVENLNWRVTQGSCQEGRGFDNRKISRDEDQIIRNVTCNCSFNNDTVCHVTSVALKGIDLSGPLPDEFGNLTRLKTLDLTRNYFNGSIPKSLGRLSSVEILSLLGNRFTGSIPSEISDMTSLQELNLEDNQLEGHLPPSLGKMSNLQKLLLSANNFTGTIPEAYGKLKNLTQFRIDGSTLSGKIPSFIGNWTKLDRLDLQGTSLEGPIPSVISELIYLTELRISDLKGPTMTFPNLTNLNLLQRLELRNCLITGQIPSYIGEKQNLKTLDLSSNMLTGPIPDSFQDLEKINYLFLTNNSLSGRIPDWIQTLKQKIDLSLNNFSESFSHFCQVLDVNLASSLSPSANTSSSCLKKGQPCSGKPRFHSLFINCGGPEIEFEGNEYEADLNLRGISNYVVSDDGKWAYSSTGVYLGRDKADYVANNQFNLKINGSEYYHTARMAPLYLHYYGLCMLNGNYKVKLHFAEITFSDDNSFTSLGKRVFDVSIQGFKYLKDFNIVEEAGGVGKGITKEFNVNVTHNTLEIHLSWAGKGTNAIPERGIYGPLISAITVTPNFKVPSHGLSTGAIAGIVVGICVFIILILFALWKMGFLCGKDETDQELLGLKTGYFSLRQIKAATDNFDPANKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKEHERMQLDWPRRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGKTPIQAPPIIKGSDNAQDARFKALEFLSQDSQTHVSSAFSQDSIEQRSKSMGGPWVDSTI 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium134g00012 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 416 605 - -
Vium134g00012 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 286 378 - -
Vium134g00012 1005 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 40 279 - -
Vium134g00012 1005 Gene3D Phosphorylase Kinase; domain 1 642 747 - -
Vium134g00012 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Vium134g00012 1005 Gene3D Ribonuclease Inhibitor 281 403 IPR032675 -
Vium134g00012 1005 Gene3D Ribonuclease Inhibitor 71 216 IPR032675 -
Vium134g00012 1005 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Vium134g00012 1005 Pfam Leucine rich repeat 294 352 IPR001611 GO:0005515
Vium134g00012 1005 SUPERFAMILY L domain-like 92 382 - -
Vium134g00012 1005 SMART serkin_6 672 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium134g00012 1005 Pfam Malectin domain 419 600 IPR021720 -
Vium134g00012 1005 ProSiteProfiles Protein kinase domain profile. 672 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium134g00012 1005 MobiDBLite consensus disorder prediction 982 1005 - -
Vium134g00012 1005 CDD STKc_IRAK 678 945 - -
Vium134g00012 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 976 - -
Vium134g00012 1005 Pfam Protein tyrosine and serine/threonine kinase 676 941 IPR001245 GO:0004672|GO:0006468
Vium134g00012 1005 Gene3D Ribonuclease Inhibitor 218 280 IPR032675 -
Vium134g00012 1005 Gene3D - 418 605 - -
Vium134g00012 1005 Gene3D Transferase(Phosphotransferase) domain 1 748 952 - -
Vium134g00012 1005 SUPERFAMILY Protein kinase-like (PK-like) 656 944 IPR011009 -
Vium134g00012 1005 FunFam Putative LRR receptor-like serine/threonine-protein kinase 748 954 - -
Vium134g00012 1005 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 643 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium134g00012 Vium-Chr134 58117 68030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium134g00012 23 1004 Receptor kinase-like Gene Family AT1G53440 61.066 0.0 1193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium134g00012 PK_Tyr_Ser-Thr 4.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium134g00012 - - gmx:121173337 1678.3