Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium134g00002 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAATGTGATTTTGTTCATGAGAGAAAGGATGGTGTAAGTAGTAATATTTGTACCTATTATCAAAAAGGAGTATGTGCTTATGGCAGTAGATGCAGATATAAACATGTCAAAGCTTATGAAGCGACGTCTTCTTCATCAAACGGACGTCATCCTCCTGTTTCAGATTCTGTGCTGAATCAAACCACCAAAGGGGCATCAAGTTGTGTTCCAAAGGCTTCGAAGTCATCTTCATCAGACAAGTGTGCAAGGAGTTCACAACATAAGAATCTGGTCTCTTCTGGAAATGATGTTGGTCAATCCAGTTCTAGTGGTGCTACAGCATCTGGACTTTTGTTTTGTTCATTTGCTGCTGCCAACTGCCCCCTTGGAAATAAATGTTCTCGTGTTCATGGAAATCGATGTTTTTACTGTAGAAAATTTTGCTTACATCCTACTGACAGTGAGGAAAGAGAAAATCATTTGGCAACTTGTGAGAAAAGGGAAAAATACCTTCAGGCTTTGAATGATAGTCAAGAAGTAGAATGCAATGTCTGTTTGGAGCGTGTTCTTTCCAAGCCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTCAATGTGACCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACACGAGTAATAATGGAACTGCTAATACAGTGAGAAAATGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAACTGCAAACAAATTGATTGCAAGCATTTTAACTTCGGAAACGGGAATTGTCCATTTGGGGCTTGTTGCTTCTACAAGCATACTGTGAAGCCTGGCTCATACACATGGATACATCGCAGGCCACCACCACCACCACAGCGGAGACAAAACAATCTTAATGAGATGTTGGACATGCTCAGCGATGTTGATTTAACTAGTGCTGAATATCTTTCTATCATGAGGGACTCGGATCTTTTCGACGATATGGATCCATTTGGGATGATAGATATATCTGATAGGCTTGCTGGTGAATCAGGTCTTTGTTTGGGCCCTTTTGATTCTGATGAAGAAGGGGTAGATTTTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGATGATTTTGGTCTTGAAGATTTTGATGATGAAGAGTTCAATCCTATGGAGGCTGCCTTGTTATCCATGATGATGCATTCTAACATAGATGAAGATGAAGATGAAGATGAAGAAGAATACAGTGATGAGTACTACTAG 1374 0.4047 MSNRVCKFYARGACLKGDQCDFVHERKDGVSSNICTYYQKGVCAYGSRCRYKHVKAYEATSSSSNGRHPPVSDSVLNQTTKGASSCVPKASKSSSSDKCARSSQHKNLVSSGNDVGQSSSSGATASGLLFCSFAAANCPLGNKCSRVHGNRCFYCRKFCLHPTDSEERENHLATCEKREKYLQALNDSQEVECNVCLERVLSKPKPSDCKFGLLPQCDHAFCLSCIRNWRNSAPTSGMDTSNNGTANTVRKCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKQIDCKHFNFGNGNCPFGACCFYKHTVKPGSYTWIHRRPPPPPQRRQNNLNEMLDMLSDVDLTSAEYLSIMRDSDLFDDMDPFGMIDISDRLAGESGLCLGPFDSDEEGVDFFQMAALSEALVSGVDDFGLEDFDDEEFNPMEAALLSMMMHSNIDEDEDEDEEEYSDEYY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium134g00002 457 CDD RING-HC_MKRN 191 256 - -
Vium134g00002 457 PANTHER MAKORIN-RELATED 1 356 IPR045072 GO:0000209|GO:0061630
Vium134g00002 457 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Vium134g00002 457 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Vium134g00002 457 SUPERFAMILY RING/U-box 184 262 - -
Vium134g00002 457 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Vium134g00002 457 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Vium134g00002 457 ProSiteProfiles Zinc finger RING-type profile. 193 256 IPR001841 -
Vium134g00002 457 SMART c3hfinal6 285 313 IPR000571 GO:0046872
Vium134g00002 457 SMART c3hfinal6 125 150 IPR000571 GO:0046872
Vium134g00002 457 SMART c3hfinal6 31 55 IPR000571 GO:0046872
Vium134g00002 457 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Vium134g00002 457 Coils Coil 272 292 - -
Vium134g00002 457 Pfam Zinc finger, C3HC4 type (RING finger) 193 255 IPR018957 GO:0046872
Vium134g00002 457 Gene3D - 1 64 - -
Vium134g00002 457 ProSiteProfiles Zinc finger C3H1-type profile. 285 314 IPR000571 GO:0046872
Vium134g00002 457 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Vium134g00002 457 SMART ring_2 193 255 IPR001841 -
Vium134g00002 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 261 IPR013083 -
Vium134g00002 457 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium134g00002 Vium-Chr134 6769 12733 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium134g00002 zf-C3HC4 1.7e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium134g00002 K15687 - gmx:100788886 716.072