Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium134g00001 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAATGTGATTTTGTTCATGAGAGAAAGGATGGTATTTGTACCTATTATCAAAAAGGAGTATGTGCTTATGGCAGTAGATGCAGATATAAACATGTCAAAGCTTATGAAGCGACGTCTTCTTCATCAAACGGACGTCATCCTCCTGTTTCAGATTCTGTGCTGAATCAAACCACCAAAGGGGCATCAAGTTGTGTTCCAAAGGCTTCGAAGTCATCTTCATCAGACAAGTGTGCAAGGAGTTCACAACATAAGAATCTGGTCTCTTCTGGAAATGATGTTGGTCAATCCAGTTCTAGTGGTGCTACAGCATCTGGACTTTTGTTTTGTTCATTTGCTGCTGCCAACTGCCCCCTTGGAAATAAATGTTCTCGTGTTCATGGAAATCGATGTTTTTACTGTAGAAAATTTTGCTTACATCCTACTGACAGTGAGGAAAGAGAAAATCATTTGGCAACTTGTGAGAAAAGGGAAAAATACCTTCAGGCTTTGAATGATAGTCAAGAAGTAGAATGCAATGTCTGTTTGGAGCGTGTTCTTTCCAAGCCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTCAATGTGACCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACACGAGTAATAATGGAACTGCTAATACAGTGAGAAAATGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAACTGCAAACAAATTGATTGCAAGCATTTTAACTTCGGAAACGGGAATTGTCCATTTGGGGCTTGTTGCTTCTACAAGCATACTGTGAAGCCTGGCTCATACACATGGATACATCGCAGGCCACCACCACCACCACAGCGGAGACAAAACAATCTTAATGAGATGTTGGACATGCTCAGCGATGTTGATTTAACTAGTGCTGAATATCTTTCTATCATGAGGGACTCGGATCTTTTCGACGATATGGATCCATTTGGGATGATAGATATATCTGATAGGCTTGCTGGTGAATCAGGTCTTTGTTTGGGCCCTTTTGATTCTGATGAAGAAGGGGTAGATTTTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGATGATTTTGGTCTTGAAGATTTTGATGATGAAGAGTTCAATCCTATGGAGGCTGCCTTGTTATCCATGATGATGCATTCTAACATAGATGAAGATGAAGATGAAGATGAAGAAGAATACAGTGATGAGTACTACTAG 1362 0.406 MSNRVCKFYARGACLKGDQCDFVHERKDGICTYYQKGVCAYGSRCRYKHVKAYEATSSSSNGRHPPVSDSVLNQTTKGASSCVPKASKSSSSDKCARSSQHKNLVSSGNDVGQSSSSGATASGLLFCSFAAANCPLGNKCSRVHGNRCFYCRKFCLHPTDSEERENHLATCEKREKYLQALNDSQEVECNVCLERVLSKPKPSDCKFGLLPQCDHAFCLSCIRNWRNSAPTSGMDTSNNGTANTVRKCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKQIDCKHFNFGNGNCPFGACCFYKHTVKPGSYTWIHRRPPPPPQRRQNNLNEMLDMLSDVDLTSAEYLSIMRDSDLFDDMDPFGMIDISDRLAGESGLCLGPFDSDEEGVDFFQMAALSEALVSGVDDFGLEDFDDEEFNPMEAALLSMMMHSNIDEDEDEDEEEYSDEYY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium134g00001 453 SMART ring_2 189 251 IPR001841 -
Vium134g00001 453 ProSiteProfiles Zinc finger C3H1-type profile. 281 310 IPR000571 GO:0046872
Vium134g00001 453 Pfam Zinc finger, C3HC4 type (RING finger) 189 251 IPR018957 GO:0046872
Vium134g00001 453 Gene3D - 1 27 - -
Vium134g00001 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 257 IPR013083 -
Vium134g00001 453 SMART c3hfinal6 27 51 IPR000571 GO:0046872
Vium134g00001 453 SMART c3hfinal6 121 146 IPR000571 GO:0046872
Vium134g00001 453 SMART c3hfinal6 281 309 IPR000571 GO:0046872
Vium134g00001 453 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Vium134g00001 453 CDD RING-HC_MKRN 187 252 - -
Vium134g00001 453 Gene3D - 28 147 - -
Vium134g00001 453 ProSiteProfiles Zinc finger RING-type profile. 189 252 IPR001841 -
Vium134g00001 453 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Vium134g00001 453 Coils Coil 268 288 - -
Vium134g00001 453 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Vium134g00001 453 PANTHER MAKORIN-RELATED 1 352 IPR045072 GO:0000209|GO:0061630
Vium134g00001 453 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Vium134g00001 453 Pfam CCCH-type zinc finger 30 49 IPR041367 -
Vium134g00001 453 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Vium134g00001 453 SUPERFAMILY RING/U-box 180 258 - -
Vium134g00001 453 SUPERFAMILY CCCH zinc finger 25 49 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium134g00001 Vium-Chr134 6768 12733 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium134g00001 zf-C3HC4 1.8e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium134g00001 K15687 - gmx:100788886 721.079