Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13465g00001 ATGTTCTCCAGCTCCCAATTCGATGCCACCGCCGGCTTCTCCGGCGGCGGATTTATGTCCTCTCAGCCGTCTAACTTCAACGATTCATCTTCCGCACCGCCAAAAAGTCGCGAAACTCAGGGTTTGGTGCCGGTGACGGTGAAGCAGATTAGTGAAGCCTCTCAAACCGGTGACGAAAAATCGAATTTCGTGATCAACGGTGTAGATCTGAACAATGTAACACTAGTGGGGATGGCGTTTGAGAAAGTTGAGAGAAACACCGATGTCAATTTTGTTTTGGACGATGGAACTGGACGAATAAAATGCCGAAGATGGGTTAATGAGACTTTTGACACGAAGGAAATGGAGGAAGTAATGAATGGTATGTACGTCCGAGTTTTTGGGCATTTGAAAAGTTTCCAAGGCGTTAGGCAACTTGTAGCTTTCTCTGTCAGGCCCGTGACAAATTTTGAGGAGATCCCTTTTCACTTTATTGATTGCATACATAACCATCTGCGCTCCAAACTGAAGTTGGAAGGAATCACTTCTACAAATCCTTCATCTGTCTCATCTTTGAACACTCCTGTCAAAAATGCCCCAAATGGATCTCAGCCGCCCACGTCAACTCCATATAGCGTGGATGGACTTAAGGATTGCGATAAATTGATTATTGACTACCTGCAGCAGCATTCAGATATGTCAGATGAACGGGGAATACATGTCAATGAACTATCCCGGGAGCTCAAGCTTCCAATGGACAGGATCATGTTGTCGCTGAAGACTCTTGGAGACGATGGTTTAGTATACTCTACCATTGATGACTACCATTACAAACAAGCTTGA 822 0.4501 MFSSSQFDATAGFSGGGFMSSQPSNFNDSSSAPPKSRETQGLVPVTVKQISEASQTGDEKSNFVINGVDLNNVTLVGMAFEKVERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEVMNGMYVRVFGHLKSFQGVRQLVAFSVRPVTNFEEIPFHFIDCIHNHLRSKLKLEGITSTNPSSVSSLNTPVKNAPNGSQPPTSTPYSVDGLKDCDKLIIDYLQQHSDMSDERGIHVNELSRELKLPMDRIMLSLKTLGDDGLVYSTIDDYHYKQA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13465g00001 273 CDD RPA2_DBD_D 72 165 - -
Vium13465g00001 273 Pfam OB-fold nucleic acid binding domain 73 145 IPR004365 GO:0003676
Vium13465g00001 273 MobiDBLite consensus disorder prediction 176 204 - -
Vium13465g00001 273 Gene3D - 38 168 IPR012340 -
Vium13465g00001 273 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Vium13465g00001 273 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vium13465g00001 273 PANTHER REPLICATION PROTEIN A-RELATED 6 271 IPR040260 -
Vium13465g00001 273 Pfam Replication protein A C terminal 175 267 IPR014892 -
Vium13465g00001 273 Gene3D - 203 273 IPR036388 -
Vium13465g00001 273 SUPERFAMILY "Winged helix" DNA-binding domain 207 271 IPR036390 -
Vium13465g00001 273 MobiDBLite consensus disorder prediction 176 205 - -
Vium13465g00001 273 FunFam Replication protein A 32 kDa subunit 204 273 - -
Vium13465g00001 273 MobiDBLite consensus disorder prediction 13 42 - -
Vium13465g00001 273 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13465g00001 Vium-Chr13465 4154 8377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13465g00001 1 271 Core DNA Replication Machinery Family AT2G24490 48.921 1.52e-92 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13465g00001 K10739 - gmx:100802512 464.536