Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1345g00001 ATGCCGACTCAATCCGACTCACCCAGTAACTCACTGAGTCAACTCGCTCAGAACGTCTTCTCCGACAACAACAGCAGCATCATGCTCGCAGCCGTTCTTTCCTTGCTCCTAGTCATCTTCTTTGTCCTCCTACTCCACGTGTATGCCAAGTGGTTCTTATCTCAGTCGCAATTACGTTCTCACACTCGCCGGTGGCGAACTCCGGTGACTGTCTCCGACGTTCTGGAACCTTCCCATTTCCACAGTATCAACATAGAAGCTTCACCCACCTGCCCGAAGGGCCTGGATTCAGCGACAGTTTCAGCAATTCCCATGTTTGTGCACAAAACAGAGAAAACAGAGGAATTGGAATGTGTGATCTGTTTGAGCGTTATTGAGGAGGGTGAGATTGGAAGGAGATTGCCAAAGTGTGGCCACGCTTTTCATGTGGAGTGCATTGACATGTGGTTTACTTCACATTCCAATTGTCCCATTTGCAGAGCTCCTATTCTGGGAAGCGATGATTCTCAACCGGGTTCTGATGACGTCTTTGAGATTGTGGTTGTTACTCCTGGTTATGAGATTAGTCAGAGTGAAATCGGTGTGATGAGTGGTTCTGTTCCAGAAAATTCTTCTTCTTTGTTGGGTTTCTCTCTGAAGAGATTGCTGAGTAAGGTTTTTCTGTCACCTGACCATGTAACTGTATTGGATGCTTCACAATGA 702 0.4687 MPTQSDSPSNSLSQLAQNVFSDNNSSIMLAAVLSLLLVIFFVLLLHVYAKWFLSQSQLRSHTRRWRTPVTVSDVLEPSHFHSINIEASPTCPKGLDSATVSAIPMFVHKTEKTEELECVICLSVIEEGEIGRRLPKCGHAFHVECIDMWFTSHSNCPICRAPILGSDDSQPGSDDVFEIVVVTPGYEISQSEIGVMSGSVPENSSSLLGFSLKRLLSKVFLSPDHVTVLDASQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1345g00001 233 FunFam RING-H2 finger protein ATL1 82 165 - -
Vium1345g00001 233 SMART FANCL_C_2 114 167 - -
Vium1345g00001 233 SUPERFAMILY RING/U-box 105 168 - -
Vium1345g00001 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 170 - -
Vium1345g00001 233 Pfam Ring finger domain 117 160 IPR001841 -
Vium1345g00001 233 CDD RING-H2_EL5-like 117 160 - -
Vium1345g00001 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 168 IPR013083 -
Vium1345g00001 233 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Vium1345g00001 233 SMART ring_2 118 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1345g00001 Vium-Chr1345 26316 28406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1345g00001 27 161 Rapid Response to Elicitors AT3G16720 40.580 1.28e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1345g00001 - - vra:106764505 428.328