Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13459g00001 ATGACTATAATCTGTACTGTGCTGTGCATACTCATACAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATATTGACTACTAGAATTATGGTAAAACAAGCAATAAAAAAATTGGCTCCTGCAGAGAAAGTTCTTCAGCGGATATTTAATGCGAGACAGCTTGCTTTGAAGCTCATAGCGAATGTAACGTATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTTCAGTGTGGTCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCAACATGAAAAGTGGAATGCTAGAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTTCTTAAAGGACGCACTTTGAAAGAGTCTTTCCAAATTGGGAATGAGATTGCCTCTGCCATCTCTGCTATGAATCCAAACCCTGTCTCCTTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTTCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGTCCTCATCAAATGGAACCTGTTTTTGATGCCAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAGATACTGGAGAAGTCTTTGAGACTCTTTTTTCAGCAAAAGGATTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGGAAAATTCTGCTTTAAAGATTTTATCTTTGCGAAGGAGGTTCGGTTGGGTACCTACAGGTCAAGAATGTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGACGGTTGACCGCAGGGCAGAACCACGTTATGCTGAGAGAATACCCTATGTTGTAATCCATGGGGAGCCTGGAGCCCGTTTGGTTGATATGGTTGTGGATCCCTTGGAAGTTTTGGCAATTGATTCCCCGTATAGAATAAATGATTTATATTATATTAATAAACAAATAACACCAGCTTTACAACGGGTATTTGGGCTTGTTGCTGCTGACCTCAACCATTGGTTTTCAGAGATGCCTCGTCCCACAAGGGAAGCTTCTGCAAAGCATAAATTAACTTCAAATTCCCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGGTAGGTTGGCCCAGGCATCAGCCCATTTATGCAATCAATGTTCAGAAAATGAGGTAGCTGCTGCAACAGCAGTAATTAGTAAGACTTCGAAGTTAGAGCAAGCGATGCAACATCTTGTTTCTATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTTGAAAGTGGTGTGAAATGCACGTCCATTTCATGTTTGGTGTTCTTTGAGAGGCGAAAGGTTCAGAAAGAACTGCTAGCTGCCACCCATGTTGCTGCAGATAAAGACTTGTACCCGAGATGCAGAGTGGAATGGTTCTGA 1443 0.4172 MTIICTVLCILIQVRRGILPRLLEEILTTRIMVKQAIKKLAPAEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNQHEKWNARVIYGDTDSMFVLLKGRTLKESFQIGNEIASAISAMNPNPVSLKMEKVYHPCFLLTKKRYVGYSYESPHQMEPVFDAKGIETVRRDTCGAVAKILEKSLRLFFQQKDLLEVKTYLQRQWKRILSGKFCFKDFIFAKEVRLGTYRSRMSSLPPAAIVATKAMTVDRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPYRINDLYYINKQITPALQRVFGLVAADLNHWFSEMPRPTREASAKHKLTSNSHRTRIDYYYLSKHCVLCGRLAQASAHLCNQCSENEVAAATAVISKTSKLEQAMQHLVSICHHCGGGDRLLESGVKCTSISCLVFFERRKVQKELLAATHVAADKDLYPRCRVEWF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13459g00001 480 Gene3D Helix hairpin bin 12 72 - -
Vium13459g00001 480 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 13 473 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vium13459g00001 480 ProSitePatterns DNA polymerase family B signature. 113 121 IPR017964 GO:0000166|GO:0003676
Vium13459g00001 480 FunFam DNA polymerase zeta 13 72 - -
Vium13459g00001 480 FunFam DNA polymerase 188 356 - -
Vium13459g00001 480 Gene3D - 188 358 IPR042087 -
Vium13459g00001 480 Gene3D Palm domain of DNA polymerase 73 183 IPR023211 -
Vium13459g00001 480 Pfam DNA polymerase family B 13 334 IPR006134 GO:0000166|GO:0003677
Vium13459g00001 480 Pfam C4-type zinc-finger of DNA polymerase delta 379 452 IPR025687 -
Vium13459g00001 480 SUPERFAMILY DNA/RNA polymerases 15 347 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13459g00001 Vium-Chr13459 987 5097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13459g00001 14 462 Core DNA Replication Machinery Family AT5G63960 31.360 1.20e-57 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13459g00001 K02350 - vum:124822026 960.288