Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1344g00004 ATGGCAAGCAAGTGGAAGAAAGCCAAGGTCGCGCTTGGTCTCAACCTCTGCATGTTCGTCCCCAGAACGTTAGACGACGATTCGCCGCCCCACACGGTGGTTTCCGAGCGCCTCTCCGACGCCGCCCTACTATCTCCGGCCAGCTGGAACACCAGCTCTTCCCGCCCCACCACGCCGCTTTCCTCTTTTCACGGCTTGAAACTTTCCAAAAGTAGCAGCAAATCCTCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAGCAAGGATCCGGCCATGCTATATTCACTGCAGAATGTTCACATTCCTTCCATTTCCACTGCATTGCTTCAAATGTGAAACATGGAAACCAAATATGTCCGGTGTGTAGAGCAAAGTGGAAGGAAATACCCTTATCGGGTCCCAGTTTGGATCCTATCCCTGGCAGAGTTTCACCAAGTCCCATCAATTGGCCCCAAAATGATGCTTTGATGGCAGTGGTCCACCGTCTACCCCTACCTCATCCTCACCGAGATTTAAATAGGAGGCATGTTGTGCCACTTTATCAGGCTTCTGAGCCAGGCATATTTGACGATGATGAATCCTTGAATCATCAAAATGTGTTTTCTGAGCGAAGTCCTTGCATTGAGAATACTGAAGATACTGAGGCTGCTAGAGCTATAGAGATTAAAACATTCCCAGAAGTATCTGCTGCTCCGGGATCCAAAACTCATTCTAACTTCACAGTTTTGGTTCATCTCAAAGCTGCTGCTTCCGCAGACACAGCTGCAGTTAAAAGACAAAACCTTAGCAGAAACCAGGCAAACTTGGCACAGATTTCACAGACTCCACGTGCCCCTGTCGACTTGGTCACAGTGCTTGATGTGAGTGGTAGCATGGCTGGAACTAAGCTTGCACTGCTCAAAAGAGCAATGGGGTTTGTCATACAGAACCTAGGCTCTAATGACCGGCTCTCTGTTATTGCCTTTTCTTCCACAGCTCGTCGCCTTTTTCCTTTGTGCAGAATGACCGATTCTGGGCGACAGCAGGCACTGCAAGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATTGCAGAAGGGCTGAGAAAAGGTGCCAAGATAATGGAAGATCGAAAGGAAAAGAATCCAGTTGCCAGTATTATCCTGCTGTCCGATGGTCAAGATAATTACACTGTCAATGGCTCTGGAACTAACCAGCCTCAACCAAATTACCAGTTTCTTCTGCCCACTTCTATCAGTGGTGATGATAGTTCAGGATTTCAAATTCCTGTGCATGCTTTTGGATTTGGTGCAGACCACGATGCTTCACTGATGCACTCCATTTCAGAGATTTCTGGTGGCACGTTTTCTTTCATCGAGACTGAAGCCGTGCTACAGGATGCGTTTGCACAATGTATTGGAGGACTTCTGAGCGTAGTTGTTCAGGAGCTTCAAGTGGGAATTGAGTGTATACACCCAAATCTCAGTCTCGTCTCACTAAAAGCAGGAAGTTACCCAACCCGTGTGGTGGCGGATGGACGCAAAGGATTGATTGAAGTCGGAGACCTGTATGCCGATGAAGAGAGAGATTTTCTAGTGTCAGTTAATGTCCCTGCTGCATCTGGCAATGAAACATCATTGATAAAGGTGAAATGTGTATACAAGGATCCCTTAACTCAGGAAACAGCAACAATAGAAAGTGAGGAAGTTAAGATTAAGCGGACAGAAATGTCTGGGCAGGTAGTAATGTCACTTGAAGTGGACAGACAGCGCAACAGGCTCCAAGCAGCGGAGACAATGGCCCAGGCTCGTGTTGCAGCTGAACGGGGGGACCTGAGTGGAGCAATATTAATTCTTGAAAACTTTAGAAAGATGCTGTCGGAGACTGTTTCGGCAAAATCCAACGACCGCCTATGTGTTGCATTAGATGCTGAGCTTAAGGAAATGCAAGAGCGGATGGCGAGTAGACATGTGTATGAAGCATCTGGGAGAGCATATATACTTTCTGGATTGAGTTCACATTCATGGCAAAGAGCAACAGCAAGAGGTGATTCCACTGATAGGTCGAGTCTTGTTCAGGCATATCAGACACCATCAATGGCCGAGATGCTTACTCGATCTCAGGCCACGTTACTAGGTAGTCCATCAGGGCAGAGGCTTCTCCAGCCACTGTTGTCAGTCAGATCACAACCAAGGCCACGGTGA 2190 0.4735 MASKWKKAKVALGLNLCMFVPRTLDDDSPPHTVVSERLSDAALLSPASWNTSSSRPTTPLSSFHGLKLSKSSSKSSKQTCSICLTKMKQGSGHAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGPSLDPIPGRVSPSPINWPQNDALMAVVHRLPLPHPHRDLNRRHVVPLYQASEPGIFDDDESLNHQNVFSERSPCIENTEDTEAARAIEIKTFPEVSAAPGSKTHSNFTVLVHLKAAASADTAAVKRQNLSRNQANLAQISQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVNGSGTNQPQPNYQFLLPTSISGDDSSGFQIPVHAFGFGADHDASLMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECIHPNLSLVSLKAGSYPTRVVADGRKGLIEVGDLYADEERDFLVSVNVPAASGNETSLIKVKCVYKDPLTQETATIESEEVKIKRTEMSGQVVMSLEVDRQRNRLQAAETMAQARVAAERGDLSGAILILENFRKMLSETVSAKSNDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDRSSLVQAYQTPSMAEMLTRSQATLLGSPSGQRLLQPLLSVRSQPRPR 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1344g00004 729 CDD vWA_C3HC4_type 281 455 - -
Vium1344g00004 729 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 78 703 - -
Vium1344g00004 729 Gene3D von Willebrand factor, type A domain 282 469 IPR036465 -
Vium1344g00004 729 SMART ring_2 80 123 IPR001841 -
Vium1344g00004 729 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Vium1344g00004 729 MobiDBLite consensus disorder prediction 47 71 - -
Vium1344g00004 729 CDD RING-H2_WAVH2 78 129 - -
Vium1344g00004 729 Pfam VWA / Hh protein intein-like 631 703 IPR032838 -
Vium1344g00004 729 Pfam Ring finger domain 79 124 IPR001841 -
Vium1344g00004 729 ProSiteProfiles VWFA domain profile. 282 468 IPR002035 -
Vium1344g00004 729 SMART VWA_4 280 467 IPR002035 -
Vium1344g00004 729 SUPERFAMILY RING/U-box 76 130 - -
Vium1344g00004 729 SUPERFAMILY vWA-like 277 468 IPR036465 -
Vium1344g00004 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Vium1344g00004 729 Pfam von Willebrand factor type A domain 282 465 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1344g00004 Vium-Chr1344 64392 68771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1344g00004 69 124 C3H Transcription Factor Family AT1G57730 41.071 9.16e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1344g00004 - - gmx:100813569 1287.32