Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13440g00006 ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATTCTGCACCCGTAACAAAGTCTAGGCTGTGTGCGCACTCCAGTTTGTTGCCTTACTCCCATTCCGGGGCAACCTTTACGCATGGAATGTTATTGACTATCCCAAGGAAGAAAACAGGAATTCTTGAAGATGTTCGTTCAAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGACTTTAGCCATGGGTTTGCATCATCTGACTCTGATACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCTGCTCTTACATGTTTTGATCAAATCACAAACTATGCAAAAGGGAAAAGGATTGCGTTGTTTATGGATTATGATGGAACTCTTTCCCCAATTGTGGATAATCCTGACTGTGCGTTCATGTCAGACAATATGCGAGCTGCTGTTAAAAAGGTGGCAGAGTATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTATATCAATTTGTAGGACTAACAGAACTCTACTACGCTGGTAGTCACGGGATGGACATCATTGGCCCTGTTAGACAATCTGAATCTGATAATCACCCGGATTGCATTAGGTTTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCCGCTGCTGAATTTCTGCCCATGATTAATGAGGTCCTCAAGTCTCTTGATGAGTGTACGAAAGACATTAAAGGTGCTAAAGTAGAGAACAATAAATTTTGCGTATCTGTGCACTACCGGAATGTTGATGAAAAGTATTGGGATTTGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCGCGTTTGCGCTTAACTCATGGCCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTTGAGTCACTTGGGCTAAATAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGGACTGACGAAGATGCATTCAAGGTTTTGAGAGAGGGGAATAAAGGTTATGGGATCTTGGTGTCTTCATCACCCAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAATCACTTGTGTTGTGGAAGTCAAGCTGCTAA 1155 0.4242 MDLKSNHTPVLTDSAPVTKSRLCAHSSLLPYSHSGATFTHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPARKITKDFSHGFASSDSDTAGAYFSWLLKYPSALTCFDQITNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSESDNHPDCIRFTDKQGKEVNLFQPAAEFLPMINEVLKSLDECTKDIKGAKVENNKFCVSVHYRNVDEKYWDLVGQRVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSSPKESNAVYSLRDPSEVMEFLKSLVLWKSSC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13440g00006 384 FunFam Trehalose 6-phosphate phosphatase 121 211 - -
Vium13440g00006 384 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 382 IPR044651 GO:0004805|GO:0005992
Vium13440g00006 384 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Vium13440g00006 384 FunFam Trehalose 6-phosphate phosphatase 222 298 - -
Vium13440g00006 384 CDD HAD_TPP 122 372 - -
Vium13440g00006 384 Gene3D - 121 204 IPR023214 -
Vium13440g00006 384 Gene3D - 219 383 IPR023214 -
Vium13440g00006 384 FunFam Trehalose 6-phosphate phosphatase 228 384 - -
Vium13440g00006 384 NCBIfam HAD-IIB family hydrolase 123 341 IPR006379 -
Vium13440g00006 384 NCBIfam trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
Vium13440g00006 384 SUPERFAMILY HAD-like 122 380 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13440g00006 Vium-Chr13440 30754 36094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13440g00006 115 377 Trehalose Biosynthesis Gene Families AT1G70290 26.429 3.18e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13440g00006 K01087 - gmx:100819495 741.11