Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13440g00002 ATGGATAGTTTCACTCATGTTCCTCCCGGTTTTAGGTTCCATCCAACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAGTGGCTTCAAGGAGGATTGACCTGGATGTCATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACGGAAGAGCAAAACGAATGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCTGGGTTTTGGAAAGCGACAGGAAGAGACAAGGCAATCTATTCCAAACACGAACTGATAGGCATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCACCAAATGGACAAAAGTCAGATTGGATAATGCATGAATATCGGCTTGAAACAGAAGAAAATGGCACTCCACAGGAAGAAGGTTGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACAATGCGTAAAGTGAATGAGCACGACTCTCCCAGTTGGTATGATGAGCAAGTATCTTTCATTCAAGACATGGACTCACCGAAGCAGACCTCTCAATCTAATCTGGTCTACCAGCTTCCCTATCCTTGCAAGAAAGAGCTAGATGTGCCCTACCAGATGCCTCGTGACCACTTCCTTCCACTTCTGGAGAGCCCAAATCCCATGGCACCATATCTTCTAGATCATGTCAACCACTCCACCACTCTGCTTCCCTCGTTACTCATACAAGAAGAACATGTTATCGGTCAGCAAATAAACTTACAGACAACCTACGGCAACAGCAACTGCAATGATCAAGCAGTGGATCAAGTAACTGATTGGCGAGTGCTTGACAAGTTCGTTGCTTCACAGCTCAGTCAAGATGGATCCAAAGAAAACGCCTACTCAAACACCTCAGCCAGTATCTTTCACGGAACTGACAGTGGCAATTGCAATGTACAGTTCAGACATTTCGACAAACATGAGATGGTGGTGCCTCAAGAAAATGCCTCAACATCAAACTCCAGCTGCCCAATTGCATTGTGGAAATAG 1047 0.4394 MDSFTHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETEENGTPQEEGWVVCRVFKKRVTTMRKVNEHDSPSWYDEQVSFIQDMDSPKQTSQSNLVYQLPYPCKKELDVPYQMPRDHFLPLLESPNPMAPYLLDHVNHSTTLLPSLLIQEEHVIGQQINLQTTYGNSNCNDQAVDQVTDWRVLDKFVASQLSQDGSKENAYSNTSASIFHGTDSGNCNVQFRHFDKHEMVVPQENASTSNSSCPIALWK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13440g00002 348 FunFam NAC domain-containing protein 16 160 - -
Vium13440g00002 348 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vium13440g00002 348 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vium13440g00002 348 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Vium13440g00002 348 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vium13440g00002 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13440g00002 Vium-Chr13440 6947 8907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13440g00002 1 348 NAC Transcription Factor Family AT1G12260 58.217 2.33e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium13440g00002 NAM 2.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13440g00002 - - gmx:100809525 591.652