Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13430g00006 ATGGATTCCAATTCCCGTTACCAAGTTCAGCAACAACACCAACCCAATTCCGGTTTACTTCGCTTTCGCTCTGCCCCCACTCAAGTCTCCAACTTCAAACAAGGCGAAGCTTCTTCCATCAACGCCAACCCCTGGGAGGGTTCTGAACCACTTTTAAGATTCTTCAATTCCGGCGACACCCTCGATACGACATCCCCTACCATACGAGAATTCGTAGATAACAAGGTTTCTAACGAGAATAAACAACCGAAGGAGTCAACAATATCGTCGTCGTCCCCATCATTATCACCTCTGAGTCGCATGAATTCCCAGCAAGGTTACAGTACTTCTGTGTTACCCTCTCGGTACCCGAGGCATGACTCGACAGTAACTGTTTCTTCATCTATGATGGTGGGTTCTGTGGGAATGGATCAGGGTGGCAAAAGCTTTAATCCCAATCTTCTCAGGCAGAGTAGCTTTCCTTCTGGCAATTTCTCTAACAGCATCTCCTTTCACAACGGGTATGATGGTACGAGAGGTGTTGAAAACTTTGGTGGTGTTAACGGCAGTGATGGTGAGCATAGAATATCTATGAACAGAATGAAGAATCACATTAGCTTCTCATCAAGGAGTCCTTCTTCTTTGGGAATTTTATCACCAACCTCTAAAATGGGCACGGAGAGTCTTAGGGTAACTAGCCCCGAGGATGGTAAACATGGAGGTAGCAATGGTGACGCTCGATATTACGGCCCTGGATTCCCTTATGCTTCTTGGAATGAGACGGCAAACCCCAAAAGACAGCGAAATAGTAATGATGAATTACTTTCTGAAGCTCAGAACGGAGACCTGGGAAATCAAGTTCATTCTCTTTCGTATCATTTGAGTTTGCCGAGAGCATCCTCGGAGATGTTTGCTATGGACAACTTGCTTCAGTTTAACGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGCGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAGAAGCAAACCAGCACAGCAGAGATGTTGGATTTGGCTGTAGACTACATAAAAAATCTTCAGAATCAATTCAAGAATCTGAGCGAAAGACGAGCTAAATGCAAATGTATAAACATGCAGAAACCAGAAACAGATAAAATTGCTTGA 1194 0.4414 MDSNSRYQVQQQHQPNSGLLRFRSAPTQVSNFKQGEASSINANPWEGSEPLLRFFNSGDTLDTTSPTIREFVDNKVSNENKQPKESTISSSSPSLSPLSRMNSQQGYSTSVLPSRYPRHDSTVTVSSSMMVGSVGMDQGGKSFNPNLLRQSSFPSGNFSNSISFHNGYDGTRGVENFGGVNGSDGEHRISMNRMKNHISFSSRSPSSLGILSPTSKMGTESLRVTSPEDGKHGGSNGDARYYGPGFPYASWNETANPKRQRNSNDELLSEAQNGDLGNQVHSLSYHLSLPRASSEMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKNLSERRAKCKCINMQKPETDKIA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13430g00006 397 FunFam Transcription factor bHLH130 family 320 389 - -
Vium13430g00006 397 SMART finulus 325 375 IPR011598 GO:0046983
Vium13430g00006 397 MobiDBLite consensus disorder prediction 57 73 - -
Vium13430g00006 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 369 IPR011598 GO:0046983
Vium13430g00006 397 Pfam Helix-loop-helix DNA-binding domain 325 370 IPR011598 GO:0046983
Vium13430g00006 397 MobiDBLite consensus disorder prediction 56 120 - -
Vium13430g00006 397 MobiDBLite consensus disorder prediction 1 44 - -
Vium13430g00006 397 Coils Coil 332 352 - -
Vium13430g00006 397 Gene3D - 321 391 IPR036638 GO:0046983
Vium13430g00006 397 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 127 390 - -
Vium13430g00006 397 Coils Coil 359 386 - -
Vium13430g00006 397 MobiDBLite consensus disorder prediction 81 120 - -
Vium13430g00006 397 MobiDBLite consensus disorder prediction 200 222 - -
Vium13430g00006 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 386 IPR036638 GO:0046983
Vium13430g00006 397 CDD bHLH_AtbHLH_like 324 377 IPR045239 -
Vium13430g00006 397 MobiDBLite consensus disorder prediction 200 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13430g00006 Vium-Chr13430 33574 37126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13430g00006 1 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 41.414 1.67e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium13430g00006 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13430g00006 - - gmx:100814652 556.984