Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13430g00004 ATGCCAATGCATCATCTTCTTTTATCACTCTTTCTCTTCTTCGTTGTTCCTCCAGCCACCTCTCTCAACTCTGACGGCCTCTCCCTGCTTGCCCTCAAAGCCGCCGTGGACTCTGATCCCACCGGCGTCCTCAGCTCCTGGTCAGAAAACGACGCCACTGCATGCCACTGGCCCGGCGTGTCCTGCACCGGCGACAGAGTTACCCAACTCTCTCTCCCTGACAAGAGCCTCAGCGGTTACATTCCCTCTGAACTGGGATTTCTCAGCTCCCTCAAAAGACTCAGTCTTCCATACAACAACTTCTCCAACGTCATTCCTCCCTCTCTCTTCAACGCCACCACCCTCATTGTCCTCGACCTCTCTCACAACTCGCTCTGCGGTTCCCTTCCCTCGCACTTTCTCTCCCTCAAGTTCCTTCGCCATTTGGACCTCTCCTCCAACTATCTCAACGGTTCCCTCCCTCCTACCCTCTCCGATCTCACTTCTCTCACCGGAACTCTCAATCTTTCTTTTAACTTCTTTTCCGGCGGGATTCCGGCCACCCTTGCTAACCTGCCTGTGGCTGTGAGCCTCGACCTCCGCAACAACAACCTCACTGGGAAAATCCCCCAGGTGGGATCCCTGCTAAACCAGGGTCCCACCGCGTTTTCTGGAAACCCTGGACTCTGTGGCTTCCCTTTGCAAACCGCGTGCCCCGAAGCGCAAAAGCCTGGGATTTTCGCCAACCCTGAAGAGGGTTTCCCTCAGAACCCCAATGCGCTCCACCCCGAAGGCTCAGACCAGAGAGTGAAACCACACGGTGGCGGCTCCGTCGCTGTTCTTGTCATCTCCGGGCTTTCGGTCGCGGTTGGAGCGGTTTCTCTCTCTCTATGGGTTTTCCGGCGGCGGTGGGGCGGCGGCGAGGAGGGGAAATTGGGGGGGCAGAAGTTGGAGGGTGAGGTGGATGTGGGCGAGGGGCAAGATGGTAAATTTGTTGTAATGGACGAATGGTTTGAGTTGGAGTTGGAGGATTTGCTTAGGGCGTCTGCGTATGTTGTTGGGAAGAGTAGGAGTGGGATTGTGTACAAGGTGGTCGGGGTCGGAAGAGGGTCTTCCGCGGCGGCGAATGTGGTGGCTGTTCGGCGACTCAGTGAGGGTGATGCGACGTGGCGATTTAAGGAGTTTGAGTCTGAGGTGGAGGCCATTGCAAGGGTTCGTCACCCCAATGTGGTTCCTTTGAGAGCTTATTATTATGCCCATGATGAGAAGCTGCTTATCACCGATTTCATTCGCAATGGAAGTTTGCACACTGCTTTACACGGTGGGCCTTCCAATTCATTGCCACCATTGTCATGGGCAGCAAGGTTAAAAATTGCTCAAGAAGCAGCCAAGGGCTTGATGTACATACACGAGTTCAATGGTCGCAAATATATCCATGGCAACATTAAGGCAACAAAAATCTTACTAGACGATGAGCTCCATGCATACGTGTCAGGTTTTGGACTTTCTCGGCTTGGTTTGGGCCCGCCAAAGTCTATTGCAATGCCTCCAAAACGGAGCAGCTTGAACCAATCTTCTGTAACCACTGCAATGAGTTCAAAGGTTGCAGCCTCCTTTAACCACTACCTGGCACCTGAGGTGCGTATGGCCGGTGGGAAGTTCAGTCAGAAATGTGATGTGTATTCATTTGGCATTGTGCTTTTGGAACTTTTGACGGGTAGGATGGCAGATTTTGGAGCAGAAAATGATGAGAAGGTGCTGGAGAGTTTTGTGAGGAAAGCGTTCAGGGAGGAGCAGCCACTGTCTGATATCATTGACCAAGCACTCATCCCTGAAGTTTATGCTAAAAAGCAAGTGATTGCTGCATTTCATATTGCTCTGAACTGCACCGAACTCGATCCAGAGTTGCGACCACGAATGAAAACCGTGTCAGAGAGCCTTGATCACATCAAATACAGTGAAAAACAAGAAAACCATGTATAG 1962 0.5214 MPMHHLLLSLFLFFVVPPATSLNSDGLSLLALKAAVDSDPTGVLSSWSENDATACHWPGVSCTGDRVTQLSLPDKSLSGYIPSELGFLSSLKRLSLPYNNFSNVIPPSLFNATTLIVLDLSHNSLCGSLPSHFLSLKFLRHLDLSSNYLNGSLPPTLSDLTSLTGTLNLSFNFFSGGIPATLANLPVAVSLDLRNNNLTGKIPQVGSLLNQGPTAFSGNPGLCGFPLQTACPEAQKPGIFANPEEGFPQNPNALHPEGSDQRVKPHGGGSVAVLVISGLSVAVGAVSLSLWVFRRRWGGGEEGKLGGQKLEGEVDVGEGQDGKFVVMDEWFELELEDLLRASAYVVGKSRSGIVYKVVGVGRGSSAAANVVAVRRLSEGDATWRFKEFESEVEAIARVRHPNVVPLRAYYYAHDEKLLITDFIRNGSLHTALHGGPSNSLPPLSWAARLKIAQEAAKGLMYIHEFNGRKYIHGNIKATKILLDDELHAYVSGFGLSRLGLGPPKSIAMPPKRSSLNQSSVTTAMSSKVAASFNHYLAPEVRMAGGKFSQKCDVYSFGIVLLELLTGRMADFGAENDEKVLESFVRKAFREEQPLSDIIDQALIPEVYAKKQVIAAFHIALNCTELDPELRPRMKTVSESLDHIKYSEKQENHV 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13430g00004 653 SUPERFAMILY L domain-like 24 228 - -
Vium13430g00004 653 Gene3D Phosphorylase Kinase; domain 1 323 422 - -
Vium13430g00004 653 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Vium13430g00004 653 Gene3D Transferase(Phosphotransferase) domain 1 423 653 - -
Vium13430g00004 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 647 IPR046959 -
Vium13430g00004 653 FunFam Leucine-rich repeat receptor-like kinase 27 139 - -
Vium13430g00004 653 ProSiteProfiles Protein kinase domain profile. 340 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13430g00004 653 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Vium13430g00004 653 FunFam Leucine-rich repeat receptor-like protein kinase 140 233 - -
Vium13430g00004 653 Pfam Protein tyrosine and serine/threonine kinase 346 639 IPR001245 GO:0004672|GO:0006468
Vium13430g00004 653 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Vium13430g00004 653 MobiDBLite consensus disorder prediction 243 262 - -
Vium13430g00004 653 SUPERFAMILY Protein kinase-like (PK-like) 345 645 IPR011009 -
Vium13430g00004 653 Gene3D Ribonuclease Inhibitor 137 233 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13430g00004 Vium-Chr13430 18840 22497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13430g00004 22 644 Receptor kinase-like Gene Family AT3G57830 58.934 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium13430g00004 PK_Tyr_Ser-Thr 3.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13430g00004 - - gmx:100796011 1064.68