Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13412g00001 ATGGACAGCAGCGGTGGAGGAAACCGAGCGGAGGCGGAGCGGTGGCTGTACACTGCGAACAAGCTGTTGACCGCGAGGGACCTGCACGGGGCGCGCTCCTTCGCGATCCGCGCGCGCGAGTCCGACCCGACTTATGAGGCCTCCGAGCACCTCCTGACGGTGATCGACACGCTCCTGGCGGGAGAGTCGCGAATCAACGACCACCACTGCGACTGGTACGGGATCCTCCAAATCCTCCGCTACACCACCAACATGGACCACATCTCCTCCCAGTATCGCCGCCTCGCTCATCTCCTCGATCCCAGCCGCAACCTCTTCGCCTTCGCCAGCCACGCCTTGTCCCTCGTCAACGACGCCTGGTCCGTACTCTCTAATCCTGCCAAGAAAGCCATGTACGACACCGATCTCCGGCTGCTCACAACTCCGCCGCCGCAGGCCCCGTCGCGTCCTCTTCCTCCTGCACAGCCCCAACCCACGCCCAGGCGAAACCCTAGATCGAGGGATGATTCGGCTGAGACGACTCGGCCGAACTCCAATCGTACCGAGTCCGCTGAGTCGACTCGGCAGACCGGAACCGTCGAAACCGACGGTGGAACGAGTTTCTGGACCTCGTGCCCTTACTGTTACGTTTTGTATGAATACCCAAAGGGGTACGAGGAATGTACCTTGAGGTGTCAGAGTTGCCGAAGAGGGTTTCATGCGGTGGTGATACGGTCGCCACCGCCGTTGAATGGGAAAGACGGTTCCTATTGCAGTTGGGGTTTTTTCCCGTTGGGATTTTCTGGGGATTCGAAGGACGTGAACGGGTTATCCTCCAATTGGAACCCGTTTTCCCCTTTGTTTCCTTGCCCTTTGAAGGGGTCGTCCTATAGTAAGCCTAAGAGGAACTGGGATTACTATGATGAAGAGGCTGCCGCCGCGTTTATCGAGTTATCCGATCCCAGTGACGACGATTCCGGGGATGGAGACTGGAGGGTTGTGAAGAGGAGTGGGAGGAAGAAGACTAGAGTTAATAAAGATTCTGGTGATAGAAGGAGGGAAACTGTGGGGAGAGCTAGGAGGGGTGTCCATACAGGGCATGAGAATGTGGGTTCAGGTGATCCTGTTACAGCTGCTGGTGCTACTGCTACTGCTAGTGTCAAAGCTAATTCTAGTGCCAAATCTAATGCTAATGCCAAAGTCAATGCTAATACCAAAGTCAATGCTAATGCCAAAGTTAATGCTGCCTCTCCTATGCCTTCTGGTGCAAGGGCGGAGTCTAGTAAGAAGACTGCGTTGGGTGGTTCGAGAAGGAGGGGTGCTGGAAACTTGGGAAAGTTGGATTTGAATGTGGAGTTCAGCAATGAGGTGGAGGAGCCTTCCCGTGGAGTGCGCGATCGTGAAGGGAATGCTGCTGGACATGCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAAGGCCTTGATGAGTTCCTCAGTAGCTTGCCCATTCTCAATGTTGTGGCAGATGATAAGGTTAAGGGTCATTAG 1509 0.5494 MDSSGGGNRAEAERWLYTANKLLTARDLHGARSFAIRARESDPTYEASEHLLTVIDTLLAGESRINDHHCDWYGILQILRYTTNMDHISSQYRRLAHLLDPSRNLFAFASHALSLVNDAWSVLSNPAKKAMYDTDLRLLTTPPPQAPSRPLPPAQPQPTPRRNPRSRDDSAETTRPNSNRTESAESTRQTGTVETDGGTSFWTSCPYCYVLYEYPKGYEECTLRCQSCRRGFHAVVIRSPPPLNGKDGSYCSWGFFPLGFSGDSKDVNGLSSNWNPFSPLFPCPLKGSSYSKPKRNWDYYDEEAAAAFIELSDPSDDDSGDGDWRVVKRSGRKKTRVNKDSGDRRRETVGRARRGVHTGHENVGSGDPVTAAGATATASVKANSSAKSNANAKVNANTKVNANAKVNAASPMPSGARAESSKKTALGGSRRRGAGNLGKLDLNVEFSNEVEEPSRGVRDREGNAAGHAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13412g00001 502 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 350 - -
Vium13412g00001 502 MobiDBLite consensus disorder prediction 407 438 - -
Vium13412g00001 502 MobiDBLite consensus disorder prediction 176 195 - -
Vium13412g00001 502 MobiDBLite consensus disorder prediction 138 195 - -
Vium13412g00001 502 MobiDBLite consensus disorder prediction 143 160 - -
Vium13412g00001 502 Pfam DnaJ domain 71 133 IPR001623 -
Vium13412g00001 502 MobiDBLite consensus disorder prediction 336 360 - -
Vium13412g00001 502 SUPERFAMILY Chaperone J-domain 68 136 IPR036869 -
Vium13412g00001 502 MobiDBLite consensus disorder prediction 311 370 - -
Vium13412g00001 502 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
Vium13412g00001 502 CDD DnaJ 71 125 IPR001623 -
Vium13412g00001 502 Gene3D DnaJ domain 60 141 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13412g00001 Vium-Chr13412 4392 6259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13412g00001 11 501 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 42.178 7.58e-106 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13412g00001 - - var:108324594 900.968