Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13410g00002 ATGGACTTTCTCCTAAATTGCTTAACCTTAAACACCACCACTCTTATTGCATCGTTTCTTTCTCTAATCTTGTTATTTTTCTATCTACATCGTAGAATTTGTTCTGAGAAACGAGCTCCAAAAGTGAAAGGTGCATGGCCAATACTTGGTCATCTTTCATTGTTAAATGGTTCAAAAACACCCCATAGAACTTTGGCTGCTTTGGCTGACAAGTATGGACCCTTGTTCACCATCAAACTCGGTCTGAAAGATGCTTTGGTGCTCAGCAACTGGGAAATGTCCAAGGAACTCTTCACCACAAACGACCTTGCCGTTTCATCACGCCCTAAACTCGTTGCTGTGGAAGTCATGTCCTACAACCAAGCCTTCGTAGGGTTGGCTCCATACGGACCTTACTGGCGAGAGCTTCGAAAGATTGTGACTGTTGAGTTTCTCTCCAACCGCAGAATAGAGCAACTCAGCCACATTCGTATCTCAGAGATTCAAACCTCATTCAAAGAGCTATACGATTTATGCTATACTAGTGTAAACAACAAGAAGGAGAATGAATCTAGTTATGGTGCTGCTACTTTGGTGGACATGAAAGAGTGGTTTGAACATTTGACTTTCAATATAATAGTGAGGATGGTGGTGGGGAAGAGGTACTTTGGTGTGGCGCATGTGGAGGGCAAGGAGAAGGCAGAAAGGTTTATGAAGAATTTAGATGAGTTCATGAATTTGATGGGCACTTTCACTGTGGCTGATGGGGTTCCTTGCTTGAGGTGGTTGGATTTGGGGGGCCATGAGAAGGCCATGAAAGCAACGGCTAAGGAAATGGACAAGATATTGAGTGAGTGGTTGGAGGAGCACCGTGAGAAGAAAGGTTTGGGTGAAAAGGTTAAGGGCGATCAAGACTTCATGGATGTGATGATTTCAGCACTTAATGGGGCTCCGATTCATGGGTTTGATGCTGATACCATTTGCAAAGCCACTACCCTGGAATTGATTTTGGGTGGAACTGATTCAACTGCTGTTACTCTTACATGGGCACTTAGTCTGCTAGTACGAAATCCTCTTGCAATGGAAAAGGCTAAAGAAGAAATTGACATGCATATTGGGAAAGATGGATACATAAGAGAATCAGAGATAAGCAAACTTGTGTATCTTCAAGCCATAGTGAAAGAGACATTACGATTGTATCCACCAGCACCTCTTTCATCACCTCGTGTATTCAAAGAAAAATGCATCTTAGGTGGCTACCACATAAAAAAGGGAACTCGACTAATGCATAATCTGTGGAAGATCCACAGAGACCCTAGTGTTTGGTCAAATCCATTAGAATTCAAACCAGAAAGGTTCCTTACCACTCACGAACATGTGGATCTGAAAGGTCGACATTTTGAGTTGTTACCCTTTGGAAGTGGGAGAAGAATGTGTGCTGGAATGTCCCTTGGCTTAAACGTGCTTCATTTCACATTGGCTAATATGTTGCATTCCTTTGACATCTCAAATCCTTCGACTGAACCTGTTGATATGACTGAGTTATTTGGATTTGTCAATACCAGAGCTACTCCACTGGAGGTTTTGGTTAAGCCACGCCTACCTCCAAACTATTATGAATCTTTGTAA 1608 0.4254 MDFLLNCLTLNTTTLIASFLSLILLFFYLHRRICSEKRAPKVKGAWPILGHLSLLNGSKTPHRTLAALADKYGPLFTIKLGLKDALVLSNWEMSKELFTTNDLAVSSRPKLVAVEVMSYNQAFVGLAPYGPYWRELRKIVTVEFLSNRRIEQLSHIRISEIQTSFKELYDLCYTSVNNKKENESSYGAATLVDMKEWFEHLTFNIIVRMVVGKRYFGVAHVEGKEKAERFMKNLDEFMNLMGTFTVADGVPCLRWLDLGGHEKAMKATAKEMDKILSEWLEEHREKKGLGEKVKGDQDFMDVMISALNGAPIHGFDADTICKATTLELILGGTDSTAVTLTWALSLLVRNPLAMEKAKEEIDMHIGKDGYIRESEISKLVYLQAIVKETLRLYPPAPLSSPRVFKEKCILGGYHIKKGTRLMHNLWKIHRDPSVWSNPLEFKPERFLTTHEHVDLKGRHFELLPFGSGRRMCAGMSLGLNVLHFTLANMLHSFDISNPSTEPVDMTELFGFVNTRATPLEVLVKPRLPPNYYESL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13410g00002 535 SUPERFAMILY Cytochrome P450 45 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 CDD CYP82 73 526 - -
Vium13410g00002 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 465 474 IPR017972 GO:0005506|GO:0016705
Vium13410g00002 535 Pfam Cytochrome P450 40 514 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS E-class P450 group I signature 472 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS E-class P450 group I signature 462 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 Gene3D Cytochrome P450 28 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS P450 superfamily signature 463 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PRINTS P450 superfamily signature 472 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13410g00002 535 PANTHER CYTOCHROME P450 82C3-RELATED 20 532 - -
Vium13410g00002 535 FunFam Cytochrome P450 82C4 30 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13410g00002 Vium-Chr13410 14819 16813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13410g00002 13 527 Cytochrome P450 AT4G31940 47.048 1.63e-170 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13410g00002 - - gmx:100789386 859.366