Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1340g00002 ATGGGTCGCGCAAGTATAACCTTAAAACAAATCTCCAATGAAAGATCCCGCAAGACAACTTTCTTGCGAAGAAAGACAGGGCTAATGAAGAAAATCTCGGAATTTTCGAAGAGGTGTGGTGGTGAGCACTGTTTGATTATGTACGATGATAATGCTGATGGTAATGGTGATGTTGAAGCAGTGACTTCGCCCGAAAACCCTGTAGAGATACATTCCATGATTCAAAAGTACTATGAAACTCAATTAAAGAAAGAGAGACCTCACAAGACTTACGGTATTGAAGAGTTTTTTAAGAACAGAAAGAACATGATTGAAGCTGAGATTTCCAAAGTGCATAAACAAATCAGAAGCATCAAGTACCCAACTTGGGATCCAAGTTTCGTGAACATGGAATAG 396 0.3914 MGRASITLKQISNERSRKTTFLRRKTGLMKKISEFSKRCGGEHCLIMYDDNADGNGDVEAVTSPENPVEIHSMIQKYYETQLKKERPHKTYGIEEFFKNRKNMIEAEISKVHKQIRSIKYPTWDPSFVNME 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1340g00002 131 PANTHER MADS BOX PROTEIN 5 115 - -
Vium1340g00002 131 CDD MADS 2 49 - -
Vium1340g00002 131 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium1340g00002 131 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium1340g00002 131 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vium1340g00002 131 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Vium1340g00002 131 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Vium1340g00002 131 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Vium1340g00002 131 SMART madsneu2 1 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1340g00002 Vium-Chr1340 15514 15909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1340g00002 1 124 Type I MADS-box Gene Family AT5G55690 35.200 1.29e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium1340g00002 SRF-TF 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1340g00002 - - var:108345476 248.054