Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13402g00002 ATGGGTGTGGATTACTACAAGATCTTGCAGGTTGATAAAAGCGCCAAAGACGATGACTTGAAGAAGGCTTACAGGAAACTTGCTATGAAATGGCACCCGGATAAAAACCCCAACAACAAAAAGGAAGCCGAAGCTAAGTTTAAGCAGATTTCCGAAGCATACGAGGTGCTTAGCGATCCTCAAAAGAAAGCTATTTATGATCAATATGGAGAAGAGGGTCTGAAAGGTCAGGTTCCTCCTCCTGATGCTGGTGGTGCTGGAACTACATACTTTTCCACTGGAGATGTTCCCGGATCTTTTCGGTTCAATCCAAGGAATGCAGATGATATTTTTGCAGAATTTTTTGGCTTCTCAAGCCCATTTGGAGGAATGGGTGGGAGAGGTGGCGGCGGCGGCGGCGGCGGAGGCATGAGATCAAGGTTCCCTGGTGGGATGTTCGGTGATGATATGTTTGCATCTTTTGGGGATGGAACAGTACATATGAGTCAAGGTGCTCCTCGGAAAGCTCCTCCCATTGAGAACAAGTTGCCTTGCACTCTTGAGGAGATATATAGAGGAACTACAAAGAAGATGAATATCTCTAGAGAAATTGCTGATGCCAGTGGCAAAACCATGCCAGTGGAAGAGATCTTAACCATTAATGTGAAGCCTGGCTGGAAGAAGGGAACAAAGATCACCTTCCCTGAAAAGGGAAATGAACAGCCAAATTTGACGCCGGCCGATCTCGTCTTCATCATTGACGAAAAGCCACACGGGGTCTTCACCCGTGACGGAAATGACCTTGTTGTAACGCAGAAGATTTCCCTTGCAGAGGCCTTAACTGGTTATACAGTGCACCTCACCACTCTGGATGGTAGAAACTTAACCATACCAATCAGCAATGTTATTCATCCCAGTTATGAAGAGGTTGTTACAAGAGAAGGCATGCCACTTCCAAAAGATCCATCAAAGAAGGGAAACTTGAGGATAAAGTTTAACATCAAGTTTCCAACTAGGCTCACTGATGAGCAAAAAGCAGGCATCAAGAAGCTCTTGGCTGCATGA 1044 0.4559 MGVDYYKILQVDKSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKKAIYDQYGEEGLKGQVPPPDAGGAGTTYFSTGDVPGSFRFNPRNADDIFAEFFGFSSPFGGMGGRGGGGGGGGGMRSRFPGGMFGDDMFASFGDGTVHMSQGAPRKAPPIENKLPCTLEEIYRGTTKKMNISREIADASGKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNLTPADLVFIIDEKPHGVFTRDGNDLVVTQKISLAEALTGYTVHLTTLDGRNLTIPISNVIHPSYEEVVTREGMPLPKDPSKKGNLRIKFNIKFPTRLTDEQKAGIKKLLAA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13402g00002 347 Pfam DnaJ domain 4 67 IPR001623 -
Vium13402g00002 347 CDD DnaJ 4 59 IPR001623 -
Vium13402g00002 347 FunFam DnaJ subfamily B member 13 3 125 - -
Vium13402g00002 347 Gene3D - 251 331 - -
Vium13402g00002 347 Pfam DnaJ C terminal domain 172 330 IPR002939 -
Vium13402g00002 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 253 339 IPR008971 GO:0006457|GO:0051082
Vium13402g00002 347 Gene3D DnaJ domain 3 125 IPR036869 -
Vium13402g00002 347 FunFam DnaJ subfamily B member 13 251 331 - -
Vium13402g00002 347 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vium13402g00002 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 171 251 IPR008971 GO:0006457|GO:0051082
Vium13402g00002 347 SMART dnaj_3 3 62 IPR001623 -
Vium13402g00002 347 SUPERFAMILY Chaperone J-domain 3 130 IPR036869 -
Vium13402g00002 347 Gene3D - 171 249 - -
Vium13402g00002 347 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 345 - -
Vium13402g00002 347 FunFam Dnaj homolog subfamily b member 168 249 - -
Vium13402g00002 347 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vium13402g00002 347 CDD DnaJ_C 170 333 - -
Vium13402g00002 347 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vium13402g00002 347 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vium13402g00002 347 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vium13402g00002 347 PRINTS DnaJ domain signature 42 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13402g00002 Vium-Chr13402 24558 27695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13402g00002 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 5.25e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13402g00002 K09510 - gmx:100778672 607.06