Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00135 ATGTCGCTTTCCTGTGCAAAAAACTTCTTCCAGAGGTTCTGGCTAGATGAATACCAAATGGGTAATATTCCCCATGGAAGCTTTTTGGCCAATGGTGATCTCCTGCCATCTCTTGGAGCCAGAATTAACCAGGAAATTAGACTTAGAAGATACGTAATCTCCCCTTTCAATCCTCGCTATAGGGCTTGGGAGTTGGTACTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCCTTTCTGCCTTACAAGGAAGATGCTCTATTCATCATAGACAACATTGTCAATGGTTTCTTTGCAATTGACATAGTGTTGACATTCTTTGTAGCATACCTTGACCACCATTCTTATCTTCTTGTTGATGATCCGAAGAGGATTTCAATCAGATACCTATCTTCCTGGTTTGCTTTTGATGTCTGCTCAACAATACCGTTTCAGTCCTTAAGCTTCCTCTTCACGAATAGTGGCAGTGAGCTTGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGAGTCAGTTCTCTGTTTGCAAGGCTAGAAAAGGACATTCGCTTCAATTATTTCTGGAATAGGTGCACAAAGCTCATAGCTGTGACCTTATTTGCTGTGCACTGTGCGGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATTCCAAAAGAACCTGGATTGGTGCTGTGTACCCAAATTTCAAAGAAGAAAGTCTTTGGGACAGATATGTCACAGCAATATACTGGTCCATTGTCACTCTTACTACCACTGGTTATGGGGATTTACATGCTGAGAACACAAGAGAGATGTTGTTTGATATCGCTTACATGCTGTTCAACTTGGGTTTAACATCCTATATCATTGGAAACATGACTAACCTTGTAGTCCATTGGACCAGCCGTACCAGAAATTTTAGAGACACAGTCAAAGCAGTTTCTGAATTTGCATCAAGAAATCATTTGCCCCATCGCATACAAGATCAGATGTTGTCACATATATGTTTGAGGTTTAAAACAGAAGAACTGAAGCAGCAAGAAACATTGAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATCTGTTTTTTCCTGTCGTGCAAAAGGTCTACCTTTTCCAAGGAGTCTCACATGATTTCCTTTTCGAACTGATTTCAGATATCGAAGCTGAATATTTCCCACCCAAGGAAGATGTCATACTACAAAAAGAGTCCTCCACGGAACTTTATGTGCTGGTTTCAGGGGCAGTGGATCTGGTTCGCTACATCGATGGGCATGATCACGTTCATGGGAAGGCAGTTGCAGTTGATGCGTTTGGAGAGATTGGAGTTTTGTATCAGATACCCCAGCCTTTAACAGTTCGTACAACAGAACTTTCTCAGATTTTAAGACTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGACGCACAAATTATAATGGATAACCTTTTAATGAGGTTGAAGGGGCGTGAAGATTTTGGCTTTGAATTTCTTTGCACAGATTCTGGGCGGTTTACAAATGAACTGCTTCAAGGAGATCATACGATACGAAGCTCTTCTCACGAGTGTACAAATAATTCACATGAGCATTCATTAATGCGTGAAGGAGAGTGCATAGATATTAGAAAGTCTGAGATCAGTTTGCGTAATGTGACTAATGATGATGATTTAGTCACTAAACATAGCGTGATCCCCGAGCATGATACAGGAGAAGCTCGTGCCCCTGCACGCAAAGAGAATCGAGATGTTGTTGAAATTCTGCTGGAAAGAGAATCAAATCCTAACGCAAATTCCATAGGGTGGACACAAAATGCTCTAGCAAAACAGCCGAAAAAGAAGAGCATTTGTGACCCAAAAAGGAGTCATGAAAAGGAGAAGTTGGATGAATTTAGAATAGAGATAGAGGAGCCAGAAATCCTCCTTGACAGGGATAGCTCAACGAGAAACAGAAGACATGGAGGTATTAGATCTATCAAGTATCCAAAAGAAAAAATAAGCACAAACTCCAATTCAAGAAATTCTAACTGTCCAAGTGATATCGATTCGGCAAGGCTTCCCAAGAAGAGAGTAACAATCCAGTTGCTACATGGATGCAGGAGTAGCTCACAGGGAAGCCACGGAAAATTAATAATCCTGCCCGATTCATTAGAAGAGCTGCTCAAAATTGCCGGTGAAAAATTTGGCGGCTTCAACCCTACAAAAGTAGTAAATACAGAGAATGCAGAGATAGATGACATAAATGTAATCCAAGATGGAGATCGTCTCTTTCTTCTGTGCTGCGATAACGAAAATTTGTGTTCGTGA 2337 0.4086 MSLSCAKNFFQRFWLDEYQMGNIPHGSFLANGDLLPSLGARINQEIRLRRYVISPFNPRYRAWELVLVVLVIYSAWICPFEFAFLPYKEDALFIIDNIVNGFFAIDIVLTFFVAYLDHHSYLLVDDPKRISIRYLSSWFAFDVCSTIPFQSLSFLFTNSGSELGFKVFNMFRLWRLRRVSSLFARLEKDIRFNYFWNRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAVSEFASRNHLPHRIQDQMLSHICLRFKTEELKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFELISDIEAEYFPPKEDVILQKESSTELYVLVSGAVDLVRYIDGHDHVHGKAVAVDAFGEIGVLYQIPQPLTVRTTELSQILRLNKTSLMNVLQANPGDAQIIMDNLLMRLKGREDFGFEFLCTDSGRFTNELLQGDHTIRSSSHECTNNSHEHSLMREGECIDIRKSEISLRNVTNDDDLVTKHSVIPEHDTGEARAPARKENRDVVEILLERESNPNANSIGWTQNALAKQPKKKSICDPKRSHEKEKLDEFRIEIEEPEILLDRDSSTRNRRHGGIRSIKYPKEKISTNSNSRNSNCPSDIDSARLPKKRVTIQLLHGCRSSSQGSHGKLIILPDSLEELLKIAGEKFGGFNPTKVVNTENAEIDDINVIQDGDRLFLLCCDNENLCS 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00135 778 FunFam Potassium channel KAT2 366 502 - -
Vium1339g00135 778 Gene3D Jelly Rolls 371 504 IPR014710 -
Vium1339g00135 778 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1339g00135 778 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1339g00135 778 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1339g00135 778 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1339g00135 778 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1339g00135 778 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1339g00135 778 Pfam KHA, dimerisation domain of potassium ion channel 699 768 IPR021789 -
Vium1339g00135 778 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Vium1339g00135 778 Gene3D Helix hairpin bin 302 368 - -
Vium1339g00135 778 Gene3D - 61 301 - -
Vium1339g00135 778 CDD CAP_ED 378 491 IPR000595 -
Vium1339g00135 778 SMART cnmp_10 378 495 IPR000595 -
Vium1339g00135 778 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium1339g00135 778 FunFam Potassium channel KAT3 62 302 - -
Vium1339g00135 778 SUPERFAMILY Voltage-gated potassium channels 55 301 - -
Vium1339g00135 778 SUPERFAMILY cAMP-binding domain-like 305 498 IPR018490 -
Vium1339g00135 778 PANTHER POTASSIUM CHANNEL AKT1 29 501 IPR045319 GO:0005249|GO:0006813
Vium1339g00135 778 ProSiteProfiles KHA domain profile. 700 778 IPR021789 -
Vium1339g00135 778 Pfam Cyclic nucleotide-binding domain 398 482 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00135 Vium-Chr1339 942671 947535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00135 1 768 Ion Channels AT5G46240 58.203 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00135 K21867 - gmx:100811356 1339.32