Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00125 ATGAGACTTTCTTCAGCCGGTTTTAGTCCTCCTCCCCAGGAAGGGGAAAGGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGTAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCGACCAACAAGGAAGTGGATGCTCATATCCCAAACTACCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAACATGACTATGCATGCTGATGCAGAGACTGACGAAGTGTATGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCGGAATTGGGCACTCCTAGTAAACAGCCCACAAACTATTTCTGCAAAACTTTGACTGCAAGTGACACAAGCACCCATGGGGGATTCTCTGTACCACGCCGTGCAGCTGAAAAAGTGTTCCCTGCATTGGATTTTTCTCAGCAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGCGGCCAGCCCAAAAGGCATCTACTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAGCTTCTACTTGGGATCCGTCGTGCTAATAGACCACAAACTGTGATGCCTTCATCAGTGTTGTCTAGTGATAGCATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGGTTCACCATTTTCTATAATCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCGAAATATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGAGGTTCAGGATGCTGTTTGAAACTGAGGAATCAAGTGTACGACGATACATGGGTACAATAACTGGCATTAGTGACCTGGATTCTGCCAGGTGGCCAAACTCACACTGGCGCTCAGTTAAGGTTGGTTGGGATGAATCTACTGCTGGAGAGAGACAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACTACGTTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACAATGGCCTCCTGGACTTCCTTCATTCCATGGCATGAAGGATGATGATTTTGGCCTGAATTCATCTCTCTTGTGGCTCCGAGATGGTGATAGGGGGCTTCAGTCTCCTACTTTTCAGGGAATTGGTGTTAATCCTTGGATGCAGCCTAGATTTGATCCCTCCATGTTGAATATGCAAACAGATATGTATCAAGCTGCTGCTGCTGTTCAGGAGATGAGGGCTTTGGATCCTTCCAAACAGCATTCTGCTTCCATACTTCAATTTCAACATCAACAACAGCAGAATTTCCCAAACAGGACAGCTGCTTTTGTGCAGGCCCAGATGTCGCAGCAGCCACAACATCAGCAGATTTTTGGAAATAATCAAGAGAATCAACATTCACCACAATCTCAGCTGCAAACTCAGGCTCATCTTCAGCAACATTTACAACATCAGCACTCATTCAATAGTCAGCATCATCATCAGCACCAGCAACAACTACGACAGACACAGCAGCAACAACAACAGCAACAAGTAGTAGATAATCAGCAAATTTCAAGTGCAGTTTCTTCAATGTCTCAGTTTGTTTCAGCTCCTCCACCTCAATCACCACCTATGCAAGCTATCTCTTCCTTGTGCCAACAGCAAAATTTTTCTGATTCGAATGGGAACTCTGGGCCTACTATTGTTTCTCCCCTTCACAGTATCTTGGGTTCATTTCCACAGGATGAAACAGCTCACCTACTGAACCTTCCCAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAACTGGGTGGCCTTCAAAGCGTGTTGCGGTGGATCCTCTTCTTTCTGCTGGAGTCTCTCAGTGTGTTCTACCTCAGGTGGAGCAGCTAGGGCAGCCCCAGAGTACTGTGTCTCAAAATGCTATTACTTTACCCCCTTTTCCTGGTAGGGAGTGCTCCATAGACCAAGAAGGGAGCAATGATCCTCAAAATCATCTCTTATTTGGTGTTAATATAGATTCATCATCCCTTCTCATGCCTAATGGAATGTCAACCCTTAAGGGGGTTAGCAGCAACAATGACTCCTCAACCATGCCATATCAATCTTCTAATTATCTGACTACCGCCACAGGGACTGATTCTTCATTGAATCATGGAATAACGCCCAGTATTGGCGGTGAATCAGGTTACCTGCAGAGTCCAGAAAATGCTGGACAAGGAAACCCGCTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCACTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGAAGTGAACTTGCACAAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAAATGGGGAACTCCGGCCTTGAGCTCTTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGAATAACAGCTGTGGGGTCTTTAGACTACTGA 2727 0.4584 MRLSSAGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPALDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRQWPPGLPSFHGMKDDDFGLNSSLLWLRDGDRGLQSPTFQGIGVNPWMQPRFDPSMLNMQTDMYQAAAAVQEMRALDPSKQHSASILQFQHQQQQNFPNRTAAFVQAQMSQQPQHQQIFGNNQENQHSPQSQLQTQAHLQQHLQHQHSFNSQHHHQHQQQLRQTQQQQQQQQVVDNQQISSAVSSMSQFVSAPPPQSPPMQAISSLCQQQNFSDSNGNSGPTIVSPLHSILGSFPQDETAHLLNLPRTSSWIPVQNSTGWPSKRVAVDPLLSAGVSQCVLPQVEQLGQPQSTVSQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDSSSLLMPNGMSTLKGVSSNNDSSTMPYQSSNYLTTATGTDSSLNHGITPSIGGESGYLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITAVGSLDY 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00125 908 FunFam Auxin response factor 291 363 - -
Vium1339g00125 908 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Vium1339g00125 908 MobiDBLite consensus disorder prediction 749 768 - -
Vium1339g00125 908 Pfam AUX/IAA family 768 860 IPR033389 -
Vium1339g00125 908 SUPERFAMILY CAD & PB1 domains 774 850 - -
Vium1339g00125 908 Gene3D - 125 228 IPR015300 -
Vium1339g00125 908 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vium1339g00125 908 FunFam Auxin response factor 125 229 - -
Vium1339g00125 908 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vium1339g00125 908 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 864 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium1339g00125 908 Gene3D - 291 363 - -
Vium1339g00125 908 FunFam Auxin response factor 771 864 - -
Vium1339g00125 908 MobiDBLite consensus disorder prediction 495 552 - -
Vium1339g00125 908 ProSiteProfiles PB1 domain profile. 775 859 IPR000270 GO:0005515
Vium1339g00125 908 SMART B3_2 127 229 IPR003340 GO:0003677
Vium1339g00125 908 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium1339g00125 908 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vium1339g00125 908 Gene3D - 772 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00125 Vium-Chr1339 856063 863036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00125 1 483 B3 DNA Binding Superfamily AT1G30330 84.694 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium1339g00125 AUX_IAA 2.5e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00125 - - gmx:100798719 1564.28