Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00124 ATGCAGCCTAAGCAAATTCACGAGATTAAGGACTTTCTTCTCACAGCCAGAAGGAAGGATGCGAGGTCGGTGAAGATTAAGAGGAGCAGAGATGTGGTTAAGTTCAAGGTTAGATGCTCCAAGTACCTCTACACACTCTGTGTGTTTGATCCAGAGAAAGCTGATAAATTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTGTAA 213 0.4366 MQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPGLSVQDL 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00124 70 Gene3D - 2 70 IPR038464 -
Vium1339g00124 70 FunFam 60S ribosomal protein L38 2 70 - -
Vium1339g00124 70 Pfam Ribosomal L38e protein family 3 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vium1339g00124 70 PANTHER 60S RIBOSOMAL PROTEIN L38 3 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00124 Vium-Chr1339 851153 851876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00124 3 70 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.118 1.01e-42 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00124 K02923 - gmx:100787764 138.658