Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00116 ATGGAAATGCCCTTAAACAAAAGAGAAAAACCATTAAAAATGGCTAACTTCAGTGCCAGTTACAGTACTTCTAGTTTCATTTGTTACGGCCTTCTACTTCCCCTTCTTCTGTTATCACTGTTCTTCTTTCAACTTTCATGGTGTGGATCCACGGTTAAGTTCCTTCCTGGATTCGAGGGACCCCTTCCTTTTGTTCTTGAAACCGGATATGTGGGAGTGGGTGAATCTGAGGATGTGCAGGCATTCTACTATTTCATAGAGTCAGAAAACAATCCAAAGGAGGATCCTCTCATGCTTTGGCTCACTGGTGGCCCTGGTTGCTCGGCCCTCTCTGGCCTTGTCTTAGAAATAGGTCCTCTTGGTTTTAAGCACGAGGAATATGATGGAATCCTCCCAAATTTGTTCTATAGGCAACACTCGTGGACTAAGGTGAGTAGCATTATATTTGTAGACTTGCCAGTTTTCACTGGATTCACTTATGCCACAACAGAGTCTGCTGCTCAACGAAGTGACTGGACACTTGTTCACCAGGTCCATCAATTTCTAAGGAAGTGGCTGATAGATCATCCAACTTTTTTGTCAAACCAAGTTTACATTGGTGGCGATTCGTACTCTGGCATTCCTATTCCAGTGATTGTTCAAGAAATTTCACAAGCAAATGAAAAGGGGGTACAACCATGGATAAATCTCCAGGGATACCTGTTAGGGAATGCTGCTACTACTGGAAGTGAATATAATTATCGAATTCCTTTTTCTCATGGAATGGGACTTATTTCCGATGAACTATATGAGTCACTACAAAAAAATTGCAAAGGAGAGTACACAAAAGTAGACGTAAAAAATGTATTATGTTCTAGAGATATGGAGTCATTCAACGAGGTTTTATCAGGAGTTAATACTGTCCATATTTTGGAACCATCATGTGTGTGGCTTGATACTGAAACATCTTGGAGGAGATCACTGATTAAAAAATATCCCAGCACGAATTTCCTAAATACTCGTCTTAAATTGCCATCCTTGAGCTGTCGAAGTTATGTATACTTCCTCTGCGGTTTTTGGGCCAATGATGAAAATGTTCGCACTGCATTACATATCCGTCAGGGAAGTATAGGAAAATGGCATCGTTGTACGTTTGATATACCTCACAAGAAGGATATCCCGAGCAGTTTTGAGTATCATGTAAATCTCAGTAGAATGGGCTATCGTTCGCTCATATACAGTGGCGATCATGACCTTTCGGTTCCTTTCTTGGCAACTCAAGCATGGGTCAAATCTTTAAACTACTCCATTGTGGATGATTGGAGACAATGGTATACAAATGGCCAAGTTGCAGGATACACCAGGACTTACTCCAATCGAATGACATTTGCAACTGTGAAGGGTGGAGGCCACACAGCTCCAGAGTACAAACCTGAAGAATGCCTTGCCATGTACAGTAGATGGCTATCTAACAGAGCTTTGTAA 1464 0.4146 MEMPLNKREKPLKMANFSASYSTSSFICYGLLLPLLLLSLFFFQLSWCGSTVKFLPGFEGPLPFVLETGYVGVGESEDVQAFYYFIESENNPKEDPLMLWLTGGPGCSALSGLVLEIGPLGFKHEEYDGILPNLFYRQHSWTKVSSIIFVDLPVFTGFTYATTESAAQRSDWTLVHQVHQFLRKWLIDHPTFLSNQVYIGGDSYSGIPIPVIVQEISQANEKGVQPWINLQGYLLGNAATTGSEYNYRIPFSHGMGLISDELYESLQKNCKGEYTKVDVKNVLCSRDMESFNEVLSGVNTVHILEPSCVWLDTETSWRRSLIKKYPSTNFLNTRLKLPSLSCRSYVYFLCGFWANDENVRTALHIRQGSIGKWHRCTFDIPHKKDIPSSFEYHVNLSRMGYRSLIYSGDHDLSVPFLATQAWVKSLNYSIVDDWRQWYTNGQVAGYTRTYSNRMTFATVKGGGHTAPEYKPEECLAMYSRWLSNRAL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00116 487 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 50 471 IPR001563 GO:0004185|GO:0006508
Vium1339g00116 487 Gene3D - 349 486 - -
Vium1339g00116 487 FunFam Carboxypeptidase 390 484 - -
Vium1339g00116 487 FunFam Serine carboxypeptidase-like 11 46 487 - -
Vium1339g00116 487 FunFam Carboxypeptidase 341 486 - -
Vium1339g00116 487 Pfam Serine carboxypeptidase 56 484 IPR001563 GO:0004185|GO:0006508
Vium1339g00116 487 Gene3D alpha/beta hydrolase 49 317 IPR029058 -
Vium1339g00116 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 454 467 IPR001563 GO:0004185|GO:0006508
Vium1339g00116 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 149 IPR001563 GO:0004185|GO:0006508
Vium1339g00116 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 160 IPR001563 GO:0004185|GO:0006508
Vium1339g00116 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 185 210 IPR001563 GO:0004185|GO:0006508
Vium1339g00116 487 SUPERFAMILY alpha/beta-Hydrolases 52 485 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00116 Vium-Chr1339 824663 827957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00116 48 75 Calmodulin-binding Proteins AT2G22960 75.000 5.78e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00116 K16296 - gmx:100792006 827.78