Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00114 ATGGCACACAACACCGACGGGTTACCTTCTTCTACGTCTGTTCAACACCATGACAAAGACAAAGCCAACCAGAAGGTTCCCTTCTACAAGCTATTCACTTTTGCAGATCACCTTGACGAGGCCTTGATGACCATTGGCACAATCTGTGCCATGGCTAATGGTTGGTCGCAGCCTATTATGACTGTCATTTTAGGAAAGCTTATCAACACTTTTGGCTCCACCGATCCATCAAATACCATCAAAGAGGTTTCCAAGGTATCTTTATTGTTTGTATACTTGGCTATTGCTACTGGAGTTGCCTCGTTTCTTCAGGTAGCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCGAGGATTCGAGGTTTGTACTTGAAAACTATATTGAATCAGGATATTGCTTTCTTTGACACTGAGACAACAACTGGTGAGGTTATTGGGAGAATGTCTGGTGACACCATTCTCATCCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCGACTTGCTGTTATTTTGATCGCATGTATACCATGTGTTGTTATTACTGGTGGAATTCTGTCCATTTTGATGAGTAGAATGTCAAGTCGTGGGCAAGCTGCTTACGCAGAGGCAGGAACTGTAGTTGAACAAACAGTGGGAGCGATCAGAACAGTGGCATCTTTCACTGGTGAGAGAAAAGCAATGGAAAAGTATAATATGAAGTTAAAGATTGCTTATAAAACTATGATTCAACAAGGGATGGCCTCTGGGTTAGGACTGGGGGTACTTTTGTTGATTGTCTTCTGCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGGATTCAATGGTGGAACCGTCATCACTGTAATAGTGGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCTCCTAGCCTAAACGCATTTGCCGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCTTATGACACCAATGGTGTTGTCATGGAAGACATAAGGGGAGATATTGAACTCAGGGATGTTTACTTTAGCTACCCTGCAAGGAAAAATGTGCGGATCTTCTCTGGATTCTCATTACATGTTTCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGCGGAAGTGGAAAGTCTACTGTGATAAGTTTATTGGAAAGATTCTATGATCCTGATTCTGGAGAAGTACTGATAGATGGCGTCAATTTGAAGGATTTTCAAGTTAGATGGATAAGAGAACAAATCGGGCTGGTTAGTCAAGAACCTATCCTGTTTGCAGCAAGTATCAAAGAGAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATTAAGTCAGCAATAACACTTGCCAATGCCAAGACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAGAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCCGAACGTGTTGTTCAAGAAGCATTAGAACAAGCCATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATCAGAAATGCTGACAGCATAGCGGTGGTTCATCAAGGAAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGAGGTTGATGGAGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAACTAAGGAAGCTGAGGGTAGCCATAATTCTGAAGCAGAGAAGTCAAATAACAATGTTAATTTTGATAATCACACAGCCAGATCTTCCACCCAGAGAGAAGTTTCATTAGGTAGAGATTCATCAAGTAGACATTACGAGTCACATAGCTTTGCTCTTTCTCATCGAAGTGGGGTACATGAATCTGTAGAAGTAGAAGATGAAGATGGGGATGTTGAAAAAAATAAAGTTGATGCTAAGAAGCCCATAAAGGTTTCTTTGAGACGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTGTCTTAGTGCTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTATTTTTGGCTTCTTGTTTTCCTCAGCAATAACTATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATATGGGTTTGGGTTTAATTACTCTTGTGGTCATACCTGTGCAAAATTACTTCTTTGGCGTTGCTGGAGGAAAATTAATAGAAAGAATTCGTTCACTGACATTTGAAAGGGTGGTCCATCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGCGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTAGCCCTCATTGTGCAAAACTTATCAACAATCATAGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCATTCATAATTCTGGCCGTGTCACCCTTGGTCCTTATGCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCACTGCAGATGGCAAGGTCAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTATCGCATCATTCTGTGCCGAATCGAAGGTGATGGATATGTACCGAAAGAAATGTTTAGAGCCGGAAAAACAAGGTGTTCGGTTGGGGCTTGTGAGTGGTGCAGGATTTGGTTTCTCTTTTCTGGCTCTATACTGCACAAATGCTTTTTGTTTCTATATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTCCAGAGGTTTTCAAGGTCTTCTTTTGTTTAACCATCACAGCAATAGGCGTTTCTCAGACTAGTGCCTTGGCACCAGACACCAACAAAGCCAAAGATTCCGCAGCATCAATATTTAACATTCTTGACCGTACACCTACCATTGACTCCAGCAGCAATGAGGGTAGAACACTAGAAGCCATTGCTGGTGATATTGATTTTGAACACGTCAGTTTTAGTTATCCAACTAGGCCTCATATTCAAATTCTCAAAGATTTGTGTCTAATCATTCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTCACACTGGACATATACTACTGGATGGAGTGGATATAAAAGAGTTCAGACTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGCATTCGTGCCAACATAGCATATGGCAAAGAAGGAGTTGCCACAGAGGAAGAGATAAGTGCAGCAGCCAAAGCATCCAATGCACACCAATTCATATGTGCTCTTCCCCAAGGCTATGACACCCCTGTTGGAGAAAGAGGAACACAATTGTCAGGAGGACAAAAGCAGCGGATAGCCATTGCAAGAGCCATGCTGAAAGATCCCAAAATCCTCTTGCTTGATGAGGCAACTAGTGCACTTGATGCCGAGTCAGAGAAAGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACAGTAGTAGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGATATAATAGCTGTAATGAAAGATGGAGCGGTAGCTGAAAAGGGAAAACATAATGAGTTGATGAAGATTATCAATGGAGTCTATGCATCATTGGTTGCTCTACATAGGACTACATAG 3810 0.4194 MAHNTDGLPSSTSVQHHDKDKANQKVPFYKLFTFADHLDEALMTIGTICAMANGWSQPIMTVILGKLINTFGSTDPSNTIKEVSKVSLLFVYLAIATGVASFLQVACWMVTGERQAARIRGLYLKTILNQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFIGGFVIAFVRGWRLAVILIACIPCVVITGGILSILMSRMSSRGQAAYAEAGTVVEQTVGAIRTVASFTGERKAMEKYNMKLKIAYKTMIQQGMASGLGLGVLLLIVFCTYALAMWYGSKLVIEKGFNGGTVITVIVALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVMEDIRGDIELRDVYFSYPARKNVRIFSGFSLHVSSGTTAALVGQSGSGKSTVISLLERFYDPDSGEVLIDGVNLKDFQVRWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANAKTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADSIAVVHQGKIVEKGTHDELIKEVDGAYSQLIRLQEGTKEAEGSHNSEAEKSNNNVNFDNHTARSSTQREVSLGRDSSSRHYESHSFALSHRSGVHESVEVEDEDGDVEKNKVDAKKPIKVSLRRLAYLNKPEVPVLVLGSVAAIIHGLVFPIFGFLFSSAITMFFEPPEKQRKDSRFWALLYMGLGLITLVVIPVQNYFFGVAGGKLIERIRSLTFERVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLMQGFLQMKFLKGFTADGKVKYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFPEVFKVFFCLTITAIGVSQTSALAPDTNKAKDSAASIFNILDRTPTIDSSSNEGRTLEAIAGDIDFEHVSFSYPTRPHIQILKDLCLIIPAGKTVALVGESGSGKSTVISLLERFYNPHTGHILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGVATEEEISAAAKASNAHQFICALPQGYDTPVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADIIAVMKDGAVAEKGKHNELMKIINGVYASLVALHRTT 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00114 1269 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Vium1339g00114 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Vium1339g00114 1269 FunFam ABC transporter B family member 1 355 604 - -
Vium1339g00114 1269 Gene3D - 363 633 IPR027417 -
Vium1339g00114 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1264 IPR003439 GO:0005524
Vium1339g00114 1269 Pfam ABC transporter transmembrane region 706 977 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00114 1269 Pfam ABC transporter transmembrane region 43 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00114 1269 Pfam ABC transporter 1045 1195 IPR003439 GO:0005524
Vium1339g00114 1269 CDD ABC_MTABC3_MDL1_MDL2 1027 1263 - -
Vium1339g00114 1269 SUPERFAMILY ABC transporter transmembrane region 30 349 IPR036640 GO:0005524|GO:0016020
Vium1339g00114 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1264 IPR027417 -
Vium1339g00114 1269 MobiDBLite consensus disorder prediction 616 641 - -
Vium1339g00114 1269 FunFam ABC transporter B family member 9 30 361 - -
Vium1339g00114 1269 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 326 - -
Vium1339g00114 1269 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Vium1339g00114 1269 PANTHER ABC TRANSPORTER B FAMILY 15 607 IPR039421 -
Vium1339g00114 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00114 1269 FunFam ABC transporter B family member 1 1017 1267 - -
Vium1339g00114 1269 SUPERFAMILY ABC transporter transmembrane region 686 1011 IPR036640 GO:0005524|GO:0016020
Vium1339g00114 1269 ProSitePatterns ABC transporters family signature. 1167 1181 IPR017871 GO:0005524|GO:0016887
Vium1339g00114 1269 Gene3D ABC transporter type 1, transmembrane domain 91 1001 IPR036640 GO:0005524|GO:0016020
Vium1339g00114 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00114 1269 SMART AAA_5 1054 1241 IPR003593 GO:0016887
Vium1339g00114 1269 SMART AAA_5 392 578 IPR003593 GO:0016887
Vium1339g00114 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Vium1339g00114 1269 Gene3D - 1017 1269 IPR027417 -
Vium1339g00114 1269 Pfam ABC transporter 385 532 IPR003439 GO:0005524
Vium1339g00114 1269 MobiDBLite consensus disorder prediction 663 678 - -
Vium1339g00114 1269 FunFam ABC transporter B family member 1 685 993 - -
Vium1339g00114 1269 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1010 - -
Vium1339g00114 1269 MobiDBLite consensus disorder prediction 605 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00114 Vium-Chr1339 815906 821145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00114 9 1269 Calmodulin-binding Proteins AT2G36910 44.041 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00114 K05658 - gmx:100801771 2103.18