Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00113 ATGGCACACAACACCGACGGGTTACCTTCTTCTACGTCTGTTCAACACCATGACAAAGACAAAGCCAACCAGAAGGTTCCCTTCTACAAGCTATTCACTTTTGCAGATCACCTTGACGAGGCCTTGATGACCATTGGCACAATCTGTGCCATGGCTAATGGTTGGTCGCAGCCTATTATGACTGTCATTTTAGGAAAGCTTATCAACACTTTTGGCTCCACCGATCCATCAAATACCATCAAAGAGGTTTCCAAGGTATCTTTATTGTTTGTATACTTGGCTATTGCTACTGGAGTTGCCTCGTTTCTTCAGGTAGCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCGAGGATTCGAGGTTTGTACTTGAAAACTATATTGAATCAGGATATTGCTTTCTTTGACACTGAGACAACAACTGGTGAGGTTATTGGGAGAATGTCTGGTGACACCATTCTCATCCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCGACTTGCTGTTATTTTGATCGCATGTATACCATGTGTTGTTATTACTGGTGGAATTCTGTCCATTTTGATGAGTAGAATGTCAAGTCGTGGGCAAGCTGCTTACGCAGAGGCAGGAACTGTAGTTGAACAAACAGTGGGAGCGATCAGAACAGTGGCATCTTTCACTGGTGAGAGAAAAGCAATGGAAAAGTATAATATGAAGTTAAAGATTGCTTATAAAACTATGATTCAACAAGGGATGGCCTCTGGGTTAGGACTGGGGGTACTTTTGTTGATTGTCTTCTGCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGGATTCAATGGTGGAACCGTCATCACTGTAATAGTGGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCTCCTAGCCTAAACGCATTTGCCGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCTTATGACACCAATGGTGTTGTCATGGAAGACATAAGGGGAGATATTGAACTCAGGGATGTTTACTTTAGCTACCCTGCAAGGAAAAATGTGCGGATCTTCTCTGGATTCTCATTACATGTTTCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGCGGAAGTGGAAAGTCTACTGTGATAAGTTTATTGGAAAGATTCTATGATCCTGATTCTGGAGAAGTACTGATAGATGGCGTCAATTTGAAGGATTTTCAAGTTAGATGGATAAGAGAACAAATCGGGCTGGTTAGTCAAGAACCTATCCTGTTTGCAGCAAGTATCAAAGAGAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATTAAGTCAGCAATAACACTTGCCAATGCCAAGACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAGAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCCGAACGTGTTGTTCAAGAAGCATTAGAACAAGCCATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATCAGAAATGCTGACAGCATAGCGGTGGTTCATCAAGGAAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGAGGTTGATGGAGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAACTAAGGAAGCTGAGGGTAGCCATAATTCTGAAGCAGAGAAGTCAAATAACAATGTTAATTTTGATAATGAATCTGTAGAAGTAGAAGATGAAGATGGGGATGTTGAAAAAAATAAAGTTGATGCTAAGAAGCCCATAAAGGTTTCTTTGAGACGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTGTCTTAGTGCTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTATTTTTGGCTTCTTGTTTTCCTCAGCAATAACTATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATATGGGTTTGGGTTTAATTACTCTTGTGGTCATACCTGTGCAAAATTACTTCTTTGGCGTTGCTGGAGGAAAATTAATAGAAAGAATTCGTTCACTGACATTTGAAAGGGTGGTCCATCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGCGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTAGCCCTCATTGTGCAAAACTTATCAACAATCATAGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCATTCATAATTCTGGCCGTGTCACCCTTGGTCCTTATGCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCACTGCAGATGGCAAGGTCAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTATCGCATCATTCTGTGCCGAATCGAAGGTGATGGATATGTACCGAAAGAAATGTTTAGAGCCGGAAAAACAAGGTGTTCGGTTGGGGCTTGTGAGTGGTGCAGGATTTGGTTTCTCTTTTCTGGCTCTATACTGCACAAATGCTTTTTGTTTCTATATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTCCAGAGGTTTTCAAGGTCTTCTTTTGTTTAACCATCACAGCAATAGGCGTTTCTCAGACTAGTGCCTTGGCACCAGACACCAACAAAGCCAAAGATTCCGCAGCATCAATATTTAACATTCTTGACCGTACACCTACCATTGACTCCAGCAGCAATGAGGGTAGAACACTAGAAGCCATTGCTGGTGATATTGATTTTGAACACGTCAGTTTTAGTTATCCAACTAGGCCTCATATTCAAATTCTCAAAGATTTGTGTCTAATCATTCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTCACACTGGACATATACTACTGGATGGAGTGGATATAAAAGAGTTCAGACTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGCATTCGTGCCAACATAGCATATGGCAAAGAAGGAGTTGCCACAGAGGAAGAGATAAGTGCAGCAGCCAAAGCATCCAATGCACACCAATTCATATGTGCTCTTCCCCAAGGCTATGACACCCCTGTTGGAGAAAGAGGAACACAATTGTCAGGAGGACAAAAGCAGCGGATAGCCATTGCAAGAGCCATGCTGAAAGATCCCAAAATCCTCTTGCTTGATGAGGCAACTAGTGCACTTGATGCCGAGTCAGAGAAAGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACAGTAGTAGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGATATAATAGCTGTAATGAAAGATGGAGCGGTAGCTGAAAAGGGAAAACATAATGAGTTGATGAAGATTATCAATGGAGTCTATGCATCATTGGTTGCTCTACATAGGACTACATAG 3702 0.419 MAHNTDGLPSSTSVQHHDKDKANQKVPFYKLFTFADHLDEALMTIGTICAMANGWSQPIMTVILGKLINTFGSTDPSNTIKEVSKVSLLFVYLAIATGVASFLQVACWMVTGERQAARIRGLYLKTILNQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFIGGFVIAFVRGWRLAVILIACIPCVVITGGILSILMSRMSSRGQAAYAEAGTVVEQTVGAIRTVASFTGERKAMEKYNMKLKIAYKTMIQQGMASGLGLGVLLLIVFCTYALAMWYGSKLVIEKGFNGGTVITVIVALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVMEDIRGDIELRDVYFSYPARKNVRIFSGFSLHVSSGTTAALVGQSGSGKSTVISLLERFYDPDSGEVLIDGVNLKDFQVRWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANAKTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADSIAVVHQGKIVEKGTHDELIKEVDGAYSQLIRLQEGTKEAEGSHNSEAEKSNNNVNFDNESVEVEDEDGDVEKNKVDAKKPIKVSLRRLAYLNKPEVPVLVLGSVAAIIHGLVFPIFGFLFSSAITMFFEPPEKQRKDSRFWALLYMGLGLITLVVIPVQNYFFGVAGGKLIERIRSLTFERVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLMQGFLQMKFLKGFTADGKVKYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFPEVFKVFFCLTITAIGVSQTSALAPDTNKAKDSAASIFNILDRTPTIDSSSNEGRTLEAIAGDIDFEHVSFSYPTRPHIQILKDLCLIIPAGKTVALVGESGSGKSTVISLLERFYNPHTGHILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGVATEEEISAAAKASNAHQFICALPQGYDTPVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADIIAVMKDGAVAEKGKHNELMKIINGVYASLVALHRTT 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00113 1233 MobiDBLite consensus disorder prediction 605 639 - -
Vium1339g00113 1233 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Vium1339g00113 1233 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Vium1339g00113 1233 FunFam ABC transporter B family member 9 30 361 - -
Vium1339g00113 1233 SMART AAA_5 1018 1205 IPR003593 GO:0016887
Vium1339g00113 1233 SMART AAA_5 392 578 IPR003593 GO:0016887
Vium1339g00113 1233 Pfam ABC transporter 385 532 IPR003439 GO:0005524
Vium1339g00113 1233 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 670 956 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00113 1233 FunFam ABC transporter B family member 1 355 604 - -
Vium1339g00113 1233 ProSitePatterns ABC transporters family signature. 1131 1145 IPR017871 GO:0005524|GO:0016887
Vium1339g00113 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Vium1339g00113 1233 SUPERFAMILY ABC transporter transmembrane region 650 975 IPR036640 GO:0005524|GO:0016020
Vium1339g00113 1233 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 326 - -
Vium1339g00113 1233 CDD ABC_6TM_Pgp_ABCB1_D2_like 659 974 - -
Vium1339g00113 1233 Gene3D ABC transporter type 1, transmembrane domain 30 957 IPR036640 GO:0005524|GO:0016020
Vium1339g00113 1233 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Vium1339g00113 1233 FunFam ABC transporter B family member 1 981 1231 - -
Vium1339g00113 1233 SUPERFAMILY ABC transporter transmembrane region 30 349 IPR036640 GO:0005524|GO:0016020
Vium1339g00113 1233 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00113 1233 Pfam ABC transporter 1009 1159 IPR003439 GO:0005524
Vium1339g00113 1233 Pfam ABC transporter transmembrane region 670 941 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00113 1233 Pfam ABC transporter transmembrane region 43 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00113 1233 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 991 1228 IPR003439 GO:0005524
Vium1339g00113 1233 PANTHER ABC TRANSPORTER B FAMILY 15 606 IPR039421 -
Vium1339g00113 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1228 IPR027417 -
Vium1339g00113 1233 CDD ABC_MTABC3_MDL1_MDL2 991 1227 - -
Vium1339g00113 1233 Gene3D - 355 604 IPR027417 -
Vium1339g00113 1233 Gene3D - 981 1230 IPR027417 -
Vium1339g00113 1233 Gene3D ABC transporter type 1, transmembrane domain 958 980 IPR036640 GO:0005524|GO:0016020
Vium1339g00113 1233 FunFam ABC transporter B family member 1 649 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00113 Vium-Chr1339 815906 821145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00113 9 1233 Calmodulin-binding Proteins AT2G36910 43.800 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00113 K05658 - gmx:100801771 2039.62