Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00112 ATGGCACACAACACCGACGGGTTACCTTCTTCTACGTCTGTTCAACACCATGACAAAGACAAAGCCAACCAGAAGGTTCCCTTCTACAAGCTATTCACTTTTGCAGATCACCTTGACGAGGCCTTGATGACCATTGGCACAATCTGTGCCATGGCTAATGGTTGGTCGCAGCCTATTATGACTGTCATTTTAGGAAAGCTTATCAACACTTTTGGCTCCACCGATCCATCAAATACCATCAAAGAGGTTTCCAAGGTATCTTTATTGTTTGTATACTTGGCTATTGCTACTGGAGTTGCCTCGTTTCTTCAGGTAGCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCGAGGATTCGAGGTTTGTACTTGAAAACTATATTGAATCAGGATATTGCTTTCTTTGACACTGAGACAACAACTGGTGAGGTTATTGGGAGAATGTCTGGTGACACCATTCTCATCCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCGACTTGCTGTTATTTTGATCGCATGTATACCATGTGTTGTTATTACTGGTGGAATTCTGTCCATTTTGATGAGTAGAATGTCAAGTCGTGGGCAAGCTGCTTACGCAGAGGCAGGAACTGTAGTTGAACAAACAGTGGGAGCGATCAGAACAGTGGCATCTTTCACTGGTGAGAGAAAAGCAATGGAAAAGTATAATATGAAGTTAAAGATTGCTTATAAAACTATGATTCAACAAGGGATGGCCTCTGGGTTAGGACTGGGGGTACTTTTGTTGATTGTCTTCTGCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGGATTCAATGGTGGAACCGTCATCACTGTAATAGTGGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCTCCTAGCCTAAACGCATTTGCCGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCTTATGACACCAATGGTGTTGTCATGGAAGACATAAGGGGAGATATTGAACTCAGGGATGTTTACTTTAGCTACCCTGCAAGGAAAAATGTGCGGATCTTCTCTGGATTCTCATTACATGTTTCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGCGGAAGTGGAAAGTCTACTGTGATAAGTTTATTGGAAAGATTCTATGATCCTGATTCTGGAGAAGTACTGATAGATGGCGTCAATTTGAAGGATTTTCAAGTTAGATGGATAAGAGAACAAATCGGGCTGGTTAGTCAAGAACCTATCCTGTTTGCAGCAAGTATCAAAGAGAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATTAAGTCAGCAATAACACTTGCCAATGCCAAGACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAGAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCCGAACGTGTTGTTCAAGAAGCATTAGAACAAGCCATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATCAGAAATGCTGACAGCATAGCGGTGGTTCATCAAGGAAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGAGGTTGATGGAGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAACTAAGGAAGCTGAGGGTAGCCATAATTCTGAAGCAGAGAAGTCAAATAACAATAGAGAAGTTTCATTAGGTAGAGATTCATCAAGTAGACATTACGAGTCACATAGCTTTGCTCTTTCTCATCGAAGTGGGGTACATGAATCTGTAGAAGTAGAAGATGAAGATGGGGATGTTGAAAAAAATAAAGTTGATGCTAAGAAGCCCATAAAGGTTTCTTTGAGACGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTGTCTTAGTGCTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTATTTTTGGCTTCTTGTTTTCCTCAGCAATAACTATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATATGGGTTTGGGTTTAATTACTCTTGTGGTCATACCTGTGCAAAATTACTTCTTTGGCGTTGCTGGAGGAAAATTAATAGAAAGAATTCGTTCACTGACATTTGAAAGGGTGGTCCATCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGCGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTAGCCCTCATTGTGCAAAACTTATCAACAATCATAGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCATTCATAATTCTGGCCGTGTCACCCTTGGTCCTTATGCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCACTGCAGATGGCAAGGTCAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTATCGCATCATTCTGTGCCGAATCGAAGGTGATGGATATGTACCGAAAGAAATGTTTAGAGCCGGAAAAACAAGGTGTTCGGTTGGGGCTTGTGAGTGGTGCAGGATTTGGTTTCTCTTTTCTGGCTCTATACTGCACAAATGCTTTTTGTTTCTATATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTCCAGAGGTTTTCAAGGTCTTCTTTTGTTTAACCATCACAGCAATAGGCGTTTCTCAGACTAGTGCCTTGGCACCAGACACCAACAAAGCCAAAGATTCCGCAGCATCAATATTTAACATTCTTGACCGTACACCTACCATTGACTCCAGCAGCAATGAGGGTAGAACACTAGAAGCCATTGCTGGTGATATTGATTTTGAACACGTCAGTTTTAGTTATCCAACTAGGCCTCATATTCAAATTCTCAAAGATTTGTGTCTAATCATTCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTCACACTGGACATATACTACTGGATGGAGTGGATATAAAAGAGTTCAGACTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGCATTCGTGCCAACATAGCATATGGCAAAGAAGGAGTTGCCACAGAGGAAGAGATAAGTGCAGCAGCCAAAGCATCCAATGCACACCAATTCATATGTGCTCTTCCCCAAGGCTATGACACCCCTGTTGGAGAAAGAGGAACACAATTGTCAGGAGGACAAAAGCAGCGGATAGCCATTGCAAGAGCCATGCTGAAAGATCCCAAAATCCTCTTGCTTGATGAGGCAACTAGTGCACTTGATGCCGAGTCAGAGAAAGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACAGTAGTAGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGATATAATAGCTGTAATGAAAGATGGAGCGGTAGCTGAAAAGGGAAAACATAATGAGTTGATGAAGATTATCAATGGAGTCTATGCATCATTGGTTGCTCTACATAGGACTACATAG 3771 0.4195 MAHNTDGLPSSTSVQHHDKDKANQKVPFYKLFTFADHLDEALMTIGTICAMANGWSQPIMTVILGKLINTFGSTDPSNTIKEVSKVSLLFVYLAIATGVASFLQVACWMVTGERQAARIRGLYLKTILNQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFIGGFVIAFVRGWRLAVILIACIPCVVITGGILSILMSRMSSRGQAAYAEAGTVVEQTVGAIRTVASFTGERKAMEKYNMKLKIAYKTMIQQGMASGLGLGVLLLIVFCTYALAMWYGSKLVIEKGFNGGTVITVIVALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVMEDIRGDIELRDVYFSYPARKNVRIFSGFSLHVSSGTTAALVGQSGSGKSTVISLLERFYDPDSGEVLIDGVNLKDFQVRWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANAKTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADSIAVVHQGKIVEKGTHDELIKEVDGAYSQLIRLQEGTKEAEGSHNSEAEKSNNNREVSLGRDSSSRHYESHSFALSHRSGVHESVEVEDEDGDVEKNKVDAKKPIKVSLRRLAYLNKPEVPVLVLGSVAAIIHGLVFPIFGFLFSSAITMFFEPPEKQRKDSRFWALLYMGLGLITLVVIPVQNYFFGVAGGKLIERIRSLTFERVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLMQGFLQMKFLKGFTADGKVKYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFPEVFKVFFCLTITAIGVSQTSALAPDTNKAKDSAASIFNILDRTPTIDSSSNEGRTLEAIAGDIDFEHVSFSYPTRPHIQILKDLCLIIPAGKTVALVGESGSGKSTVISLLERFYNPHTGHILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGVATEEEISAAAKASNAHQFICALPQGYDTPVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADIIAVMKDGAVAEKGKHNELMKIINGVYASLVALHRTT 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00112 1256 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Vium1339g00112 1256 PANTHER ABC TRANSPORTER B FAMILY 15 607 IPR039421 -
Vium1339g00112 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Vium1339g00112 1256 MobiDBLite consensus disorder prediction 650 665 - -
Vium1339g00112 1256 CDD ABC_MTABC3_MDL1_MDL2 1014 1250 - -
Vium1339g00112 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1014 1251 IPR003439 GO:0005524
Vium1339g00112 1256 Gene3D ABC transporter type 1, transmembrane domain 30 621 IPR036640 GO:0005524|GO:0016020
Vium1339g00112 1256 FunFam ABC transporter B family member 1 355 604 - -
Vium1339g00112 1256 Pfam ABC transporter transmembrane region 693 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00112 1256 Pfam ABC transporter transmembrane region 43 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00112 1256 FunFam ABC transporter B family member 1 1004 1254 - -
Vium1339g00112 1256 SUPERFAMILY ABC transporter transmembrane region 673 998 IPR036640 GO:0005524|GO:0016020
Vium1339g00112 1256 Pfam ABC transporter 385 532 IPR003439 GO:0005524
Vium1339g00112 1256 Gene3D - 1004 1253 IPR027417 -
Vium1339g00112 1256 Gene3D - 355 604 IPR027417 -
Vium1339g00112 1256 Gene3D - 660 671 IPR027417 -
Vium1339g00112 1256 MobiDBLite consensus disorder prediction 605 665 - -
Vium1339g00112 1256 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 326 - -
Vium1339g00112 1256 FunFam ABC transporter B family member 1 672 980 - -
Vium1339g00112 1256 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Vium1339g00112 1256 Gene3D ABC transporter type 1, transmembrane domain 981 1003 IPR036640 GO:0005524|GO:0016020
Vium1339g00112 1256 Gene3D ABC transporter type 1, transmembrane domain 672 980 IPR036640 GO:0005524|GO:0016020
Vium1339g00112 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 693 979 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00112 1256 SMART AAA_5 1041 1228 IPR003593 GO:0016887
Vium1339g00112 1256 SMART AAA_5 392 578 IPR003593 GO:0016887
Vium1339g00112 1256 CDD ABC_6TM_Pgp_ABCB1_D2_like 682 997 - -
Vium1339g00112 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00112 1256 ProSitePatterns ABC transporters family signature. 1154 1168 IPR017871 GO:0005524|GO:0016887
Vium1339g00112 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Vium1339g00112 1256 MobiDBLite consensus disorder prediction 606 642 - -
Vium1339g00112 1256 FunFam ABC transporter B family member 9 30 361 - -
Vium1339g00112 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1251 IPR027417 -
Vium1339g00112 1256 Pfam ABC transporter 1032 1182 IPR003439 GO:0005524
Vium1339g00112 1256 SUPERFAMILY ABC transporter transmembrane region 30 349 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00112 Vium-Chr1339 815906 821145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00112 9 1256 Calmodulin-binding Proteins AT2G36910 44.480 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00112 K05658 - gmx:100801771 2077.75