Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00110 ATGGCACCAGACGAAGAACACAAGGTCAAAGTCCAGGAGAAGGTTCCATTTTACAAGCTATTCACTTTTGCAGATAGCCTTGACAGGACTTTGATGATCATTGGTCTCATCTGTGCCATGGCTAATGGGATGGGGCAGCCTCTCATGACCCTAATTTTTGGGAAGATGATCAATGCCTTTGGCTCCACTGATCCTTCCCACACAGTTAAGGAAGTTTCCAAGGTTGTGTTATTATTTGTTTACCTGGCTTTTGGTGCTGGAATAGCCTCTTTTCTGCAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCTCGGATCCGTTGCATGTACTTGAAAACTATATTGAAGCAAGACATTACCTTTTTTGACACTGAAACAAGTGGTGAGGTAATTGCAAGAATGTCAGGTGACACCATTCTCATTGAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGTTACATCCTTTTTTGGTGCCTTTATAATTGCCTTCACAAGAGGATGGCAACTCTGTCTAGTTCTGCTTGCATGTATTCCTTGTATTGTTATTGTTGGTGGAATTATATCCGTGATGATGGAGATAATGTCAACACGCGGGCAAGCTGCTTATGCAGAAGCTGGAAGTGTTGCAGAACAAACAGTTGGAGCCATCAGAACAGTTGCCTCTTTCACTGGTGAGAAAAAAGCAATAGAAAAGTATAATAACAAGTTAAGGATAGCTTATATTACAACTGTTGAACAAGGGCTGGCTTCAGGGTTTGGAATGGGAATACTTTTATTGATTATATTTTCCACCTATGCACTTTCCATGTGGTATGGTTCTAAACTCATCATTGACAAAGGCTATGATGGTGGAACTGTTTTCAACATTATCATATCAATGAATACTGGTGCAATGGCACTTGGTCAGGCAACACCATACGTGAATTCATTTGCAGCCGGTCAAGCTGCAGCATATAAGATGTTTGAGACAATTAAACGAAAGCCAAAAATAGATGCTTATGACACCAATGGTGTTGTCTTAGAAGACATAAAGGGAGATGTTGAACTCAAAGATGTTTACTTCAGATACCCTGCAAGGCCAGATGTTCAGATATTTTCCGGATTCTCATTCTATATTCCGAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGGAAGTCAACTATAATCAGTTTATTAGAAAGATTTTATGATCCTGAAGCTGGAGAAGTTCTTATAGATGGTGTGAATTTGAAGAATTTTCAAGTTAGATGGATAAGAGAACAGATTGGACTTGTTGGTCAAGAACCTGTCCTGTTTACAGCTAGTATTAAAGACAACATAGCATACGGGAAAGAAGGTGCAACAGATGAGGAGATAACTACAGCAATAACTCTTGCCGATGCAAAAAAGTTCATTGATAAGCTGCCTCAGGGCATTGACACGGTGGTAGGAGGACATGGAACTCAAATTTCCGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTCCTCGATGAAGCTACTAATGCATTAGATGATGAGTCTGAGCATATGGTTCAAGTAGCACTTGAAAAAGTTATTACCCCAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACTATTAGACACGCTGACATCATAGCAGTGGTACATCAGGGCAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCGGCTTGTTCGTCTACAAGAAGGAAATAAAGGAGCAGAAGAAGGGAGCCGTAAGTCAGAAGCAGATAAGTCAAATAACAACAGTTTCAACCTAACTCGAAGAACATCCTTTGCGAGATCGAGCAGTAGACACTCTCTCTCACTTGGTTTTGCTCTTCCTTATCAATTTCCCTTGCACGAGTCTGGAGTGGAAGATAAAGGGGATGTTGAAAGTAGTGACGTTGATAATAAGAAGCATCAAAGGGTTGCTGTTAACTATTTGGTCAAGTTGAACAAGCCAGAGGTTCCTGTCTTAGTACTAGGATCCATTGCAGCCGCAATACATGGTCTTACTCTCCCTGTATTTGGACTCTTGCTCTCATCAGCTGTTAACACATTCTTTAAACCTCCTGACCAGCTTAGGAAAGATTCTATGTTTTGGTCATTTCTATTTGTTGGTTTGGGGATTGCCGGTCTGGTGGCTATGACATTGCAAAACTACTTATTTGCGATAGCAGGTGGGAAACTTATAGAACGAATTCGTTCAATGACATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCATCCTTCAAATTCATGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCAACAGTGAGAAGTCTCGTCGGTGACACCTTATCCCTCATTGTGCAAAACATAGCAACAATCACAACAGGTTTAGTTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTAATTCTGGCTGTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAAACCAAGTTCTTGAAAGGATTCAGTGCAGATGCAAAGGTGAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTATTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGGTGGATATGTACATGAAGAAATGTTCAGGGCCAAAAAAGCAAGGTGTTCGCTTGGGGCTTGTTAGTGGTGCAGGACTAGGTTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTATTCTTGTGCAAGACGGGAAAGCAACTTTTGGAGATGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACAGCAATTGGTGTTTCCCAGAGCAGTGCCTTGGCTCCAAATACTAACAGAGCCAAAGATTCTGCAACTTCAATATTCAAAATTCTTGATACCAAATCAGCGATTGACTCCAGCAGTGATGATGGCACAACACTAGACCCCATAAAAGGTGATATTGAACTACAACAAGTCAGATTTTGCTACCCAACAAGGCCTGATATTCAAATCTTCAAGGACTTGTGTCTAAGCATGCCAGCTGCAAAGACCGTTGCCTTGGTTGGGGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGATTCTGGACGTATACTACTTGATGGAGTGGATATAAAAAACTTCAGACTGAGTTGGTTGAGACAACAAATGGTTTTGGTTGGTCAAGAGCCAATTCTTTTCAATGAAAGCATTCGTGCCAACATAGTTTATAGTAAAGAGGGAGGTGCCACAGAGGAAGAAATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATAAGCTCTCTTCCACATAGTTATGACACCCCTGTGGGAGAACGAGGGACACAACTGTCAAGAGGACAAAAGCAACGCATAGCCATTGCAAGAGCCATTCTGAAAGATCCAAAAATCCTTTTGCTGGATGAGGCTACCAGTGCACTTGATGCAGAATCTGAGTGTGTGGTTCAAGAGGCTCTTGATAAAGTGAGTGTTAATAGAACTACCATTATGGTAGCTCACCGTCTTGCAACAATTAAAGGTGCTGACATTATAGCAGTATTAAAAAATGGGGTCATTGCTGAGAAGGGGAGACATGACGCGTTGATGAAGATTGATGATGGAGTTTATGCTTCAATGGTATCTCTCCATATCAGTGCATCATAG 3747 0.415 MAPDEEHKVKVQEKVPFYKLFTFADSLDRTLMIIGLICAMANGMGQPLMTLIFGKMINAFGSTDPSHTVKEVSKVVLLFVYLAFGAGIASFLQVSCWMVTGERQAARIRCMYLKTILKQDITFFDTETSGEVIARMSGDTILIEDAMGEKVGKFIQLVTSFFGAFIIAFTRGWQLCLVLLACIPCIVIVGGIISVMMEIMSTRGQAAYAEAGSVAEQTVGAIRTVASFTGEKKAIEKYNNKLRIAYITTVEQGLASGFGMGILLLIIFSTYALSMWYGSKLIIDKGYDGGTVFNIIISMNTGAMALGQATPYVNSFAAGQAAAYKMFETIKRKPKIDAYDTNGVVLEDIKGDVELKDVYFRYPARPDVQIFSGFSFYIPSGTTAALVGQSGSGKSTIISLLERFYDPEAGEVLIDGVNLKNFQVRWIREQIGLVGQEPVLFTASIKDNIAYGKEGATDEEITTAITLADAKKFIDKLPQGIDTVVGGHGTQISGGQKQRIAIARAILKNPRILLLDEATNALDDESEHMVQVALEKVITPRTTVVVAHRLTTIRHADIIAVVHQGKIVEKGTHDELIKDADGAYSRLVRLQEGNKGAEEGSRKSEADKSNNNSFNLTRRTSFARSSSRHSLSLGFALPYQFPLHESGVEDKGDVESSDVDNKKHQRVAVNYLVKLNKPEVPVLVLGSIAAAIHGLTLPVFGLLLSSAVNTFFKPPDQLRKDSMFWSFLFVGLGIAGLVAMTLQNYLFAIAGGKLIERIRSMTFNKVVHQEISWFDHPSNSCGAVSARLATDASTVRSLVGDTLSLIVQNIATITTGLVIAFTANWILAFVILAVSPLLLLQGYLQTKFLKGFSADAKVKYEEASQVANDAIGSIRTVASFCAEPKVVDMYMKKCSGPKKQGVRLGLVSGAGLGFSFLALYCTNAFCFYIGSILVQDGKATFGDVFKVFFALTVTAIGVSQSSALAPNTNRAKDSATSIFKILDTKSAIDSSSDDGTTLDPIKGDIELQQVRFCYPTRPDIQIFKDLCLSMPAAKTVALVGESGSGKSTVISLLERFYNPDSGRILLDGVDIKNFRLSWLRQQMVLVGQEPILFNESIRANIVYSKEGGATEEEIVAAAEAANAHKFISSLPHSYDTPVGERGTQLSRGQKQRIAIARAILKDPKILLLDEATSALDAESECVVQEALDKVSVNRTTIMVAHRLATIKGADIIAVLKNGVIAEKGRHDALMKIDDGVYASMVSLHISAS 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00110 1248 CDD ABC_MTABC3_MDL1_MDL2 353 591 - -
Vium1339g00110 1248 SUPERFAMILY ABC transporter transmembrane region 19 337 IPR036640 GO:0005524|GO:0016020
Vium1339g00110 1248 FunFam ABC transporter B family member 1 995 1245 - -
Vium1339g00110 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 318 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00110 1248 Gene3D ABC transporter type 1, transmembrane domain 19 614 IPR036640 GO:0005524|GO:0016020
Vium1339g00110 1248 PANTHER ABC TRANSPORTER B FAMILY 4 592 IPR039421 -
Vium1339g00110 1248 SMART AAA_5 1032 1225 IPR003593 GO:0016887
Vium1339g00110 1248 SMART AAA_5 380 566 IPR003593 GO:0016887
Vium1339g00110 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 326 - -
Vium1339g00110 1248 MobiDBLite consensus disorder prediction 593 621 - -
Vium1339g00110 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1243 IPR027417 -
Vium1339g00110 1248 Gene3D ABC transporter type 1, transmembrane domain 663 972 IPR036640 GO:0005524|GO:0016020
Vium1339g00110 1248 Gene3D ABC transporter type 1, transmembrane domain 973 994 IPR036640 GO:0005524|GO:0016020
Vium1339g00110 1248 Gene3D - 343 592 IPR027417 -
Vium1339g00110 1248 Gene3D - 995 1244 IPR027417 -
Vium1339g00110 1248 Gene3D - 644 662 IPR027417 -
Vium1339g00110 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 591 IPR027417 -
Vium1339g00110 1248 FunFam ABC transporter B family member 9 19 348 - -
Vium1339g00110 1248 FunFam ABC transporter B family member 1 343 592 - -
Vium1339g00110 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00110 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1242 IPR003439 GO:0005524
Vium1339g00110 1248 CDD ABC_MTABC3_MDL1_MDL2 1005 1241 - -
Vium1339g00110 1248 ProSitePatterns ABC transporters family signature. 492 506 IPR017871 GO:0005524|GO:0016887
Vium1339g00110 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 353 589 IPR003439 GO:0005524
Vium1339g00110 1248 MobiDBLite consensus disorder prediction 607 621 - -
Vium1339g00110 1248 FunFam ABC transporter B family member 1 663 971 - -
Vium1339g00110 1248 Pfam ABC transporter 373 520 IPR003439 GO:0005524
Vium1339g00110 1248 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Vium1339g00110 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 988 - -
Vium1339g00110 1248 Pfam ABC transporter transmembrane region 684 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00110 1248 Pfam ABC transporter transmembrane region 32 303 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1339g00110 1248 SUPERFAMILY ABC transporter transmembrane region 672 985 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00110 Vium-Chr1339 809633 814910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00110 5 1244 Calmodulin-binding Proteins AT2G36910 43.571 0.0 1018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00110 K05658 - gmx:100792531 2034.61