Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00082 ATGGCTTTTCCAAACCCATCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACTACCAATCGCCAAGTCACTTTCTGCAAGCGCAGAAACGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGAAACTATTGAGAGGTACAAAAAAGCATGTTCAGATTCGTCTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTGCACAAATAAGTAGCCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTTTGGGCTCTATGAATACCAAGGATCTCAAAAACCTGGAGAGTAAACTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCGAAGATAGCTGAAAGTGAGAGGAGCCACAATATGGGTGTGTTGCCTGGAGGCACAAGCTATGACTCTATGCAGTCTCAGCAGCCATTTGACTCTCGTGGTTACTTCCAAGTCACTGGATTACAACCCAATAGTCAGTATGCCCGACAAGATCAGATGTCCCTTCAATTAGTATGA 723 0.4371 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKETIERYKKACSDSSAGSASEANAQFYQQEADKLRAQISSLQNNNRQMMGESLGSMNTKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSHNMGVLPGGTSYDSMQSQQPFDSRGYFQVTGLQPNSQYARQDQMSLQLV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00082 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 194 - -
Vium1339g00082 240 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Vium1339g00082 240 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Vium1339g00082 240 FunFam agamous-like MADS-box protein AGL11 28 110 - -
Vium1339g00082 240 Gene3D - 28 158 IPR036879 GO:0003677|GO:0046983
Vium1339g00082 240 Pfam K-box region 98 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium1339g00082 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Vium1339g00082 240 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Vium1339g00082 240 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium1339g00082 240 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Vium1339g00082 240 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Vium1339g00082 240 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Vium1339g00082 240 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Vium1339g00082 240 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Vium1339g00082 240 Coils Coil 138 158 - -
Vium1339g00082 240 Coils Coil 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00082 Vium-Chr1339 604844 613168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00082 14 240 MADS-box Gene Family AT3G58780 67.660 1.30e-106 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium1339g00082 K-box 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00082 K09264 - gmx:732595 427.557