Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00080 ATGGAATCCAAAAACCCTGCGAGGTTTACGCTGGGGAAGCAGTCATCGCTTGCCCCAGAACGCCATAACGAAGGAGCGGAGCCTCAAAACGAAGGAGACGCTGTTGATCAGGGTGTGAGGTTGATGTACTCGGCGTTCGAAGGGGATGTGGATGGTATTCGCGAGGTGTTGGAGTCTGGTGTGAGTGTGAATTACAAGGATATTGATTATCGCACTGCTCTTCATGTCGCATCATGTGAGGGCTTCACTGATGTCGCTGATTTGTTACTCCAAAAAGGTGCTGAAGTTGATGCTAAAGATCGATGGGGGAGCACGCCACTTGCTGATGCTATTTGTTATAAAAGAAATGACGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCCACTGATGGCCCCTATGCATGTTAATCATGCACGTGAAGTCCCAGAGTATGAAATAAATCCTGAAGAGCTCGATTTTACCAACAGTGTGGAGATAACGAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAGAGGTTGCAGTAAAAAAGCTTGGGGAGGAAGTAATTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAACTTGCCTTGTTCCAGAAGATCCGGCATCCAAATGTCATCCAATTTCTGGGTGCTGTGACTCAGAGCAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCTTGAAAAGAAAGGGAGCTTTGAAACCATCTACAGCTGTGAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCACCCATTATTCACCGTGATCTTGAACCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCCGTTAAAGAAGACAAGCCTCTAACATGCCAAGAAACTTCCTGCCGGTATGTGGCTCCGGAAGTTTTCAAACAAGAAGAATATGACACCAAAGTGGATGTATTTTCATTTGCACTAATTCTACAAGAGATGATTGAAGGCTGCCCTCCTTTTTCTGCAAAGCAAGAAGATGAAGTTCCTAAGGTGTATGCTGCCAAAGAGCGTCCACCTTTTCGAGCTCCATCCAAGCATTACTCCCATGGAATTAGAGAATTGATTGAGGAGTGCTGGAATGAAAATCCAGCTATGAGGCCAACATTCAGGCAAATTATAACAAGGCTGGAGTTCATCTACAACACAATCGGTCAAAAAAGACGTTGGAAGGTTAGGCCATTGAAATGTTTCCAAAATCTGGAAGCCTTGTTAAAGAGAGATCATTCAAATGGAAGCAGTCGTGGTTCATCTCGCTCTAAATCCAGCAGAATATGA 1368 0.4444 MESKNPARFTLGKQSSLAPERHNEGAEPQNEGDAVDQGVRLMYSAFEGDVDGIREVLESGVSVNYKDIDYRTALHVASCEGFTDVADLLLQKGAEVDAKDRWGSTPLADAICYKRNDVIKLLEKHGAKPLMAPMHVNHAREVPEYEINPEELDFTNSVEITKGTFCSALWRGTEVAVKKLGEEVISDEEKVKAFRDELALFQKIRHPNVIQFLGAVTQSSPMMIVTEYLPKGDLRDFLKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQETSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKQEDEVPKVYAAKERPPFRAPSKHYSHGIRELIEECWNENPAMRPTFRQIITRLEFIYNTIGQKRRWKVRPLKCFQNLEALLKRDHSNGSSRGSSRSKSSRI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00080 455 FunFam Integrin-linked protein kinase family 20 145 - -
Vium1339g00080 455 FunFam serine/threonine-protein kinase STY46-like 147 230 - -
Vium1339g00080 455 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 113 410 - -
Vium1339g00080 455 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Vium1339g00080 455 FunFam Os01g0748600 protein 140 427 - -
Vium1339g00080 455 SUPERFAMILY Ankyrin repeat 40 131 IPR036770 -
Vium1339g00080 455 Gene3D Phosphorylase Kinase; domain 1 146 229 - -
Vium1339g00080 455 Pfam Ankyrin repeats (3 copies) 41 129 IPR002110 GO:0005515
Vium1339g00080 455 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Vium1339g00080 455 PRINTS Tyrosine kinase catalytic domain signature 378 400 IPR001245 GO:0004672|GO:0006468
Vium1339g00080 455 PRINTS Tyrosine kinase catalytic domain signature 265 283 IPR001245 GO:0004672|GO:0006468
Vium1339g00080 455 PRINTS Tyrosine kinase catalytic domain signature 226 239 IPR001245 GO:0004672|GO:0006468
Vium1339g00080 455 Coils Coil 449 455 - -
Vium1339g00080 455 CDD STKc_MAP3K-like 160 407 - -
Vium1339g00080 455 SUPERFAMILY Protein kinase-like (PK-like) 159 410 IPR011009 -
Vium1339g00080 455 MobiDBLite consensus disorder prediction 1 34 - -
Vium1339g00080 455 PIRSF ILK 1 430 - -
Vium1339g00080 455 Gene3D Transferase(Phosphotransferase) domain 1 230 451 - -
Vium1339g00080 455 Gene3D - 7 145 IPR036770 -
Vium1339g00080 455 ProSiteProfiles Protein kinase domain profile. 119 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00080 455 SMART ANK_2a 69 98 IPR002110 GO:0005515
Vium1339g00080 455 SMART ANK_2a 102 131 IPR002110 GO:0005515
Vium1339g00080 455 SMART ANK_2a 36 65 IPR002110 GO:0005515
Vium1339g00080 455 Pfam Protein tyrosine and serine/threonine kinase 170 407 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00080 Vium-Chr1339 570187 577734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00080 8 428 MAP Kinase Kinase Kinase AT4G18950 68.310 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vium1339g00080 PK_Tyr_Ser-Thr 1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00080 - - gmx:100790126 836.639