Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00076 ATGGCTACCGAAAAAGTCAAACCCATTGGCATTGACTTGGGCACAACCTACAGCTGCGTAGCAGTGTGGCAAGACAGCCGTGTCCAAGTCATTTCCAACGACCAAGGCAACCGCACTACCCCTTCCTACGTTGCCTTCACCGACACTCAGAGGTTGTTGGGCGATGATGCCATGAATCAGCGATTCAAGAACCCTCACAACACTGTCTTCGATGCCAAACGTTTGATCGGTCGCAGATTCTCCGACATGTCTGTTCAGCAAGACATGAAGCTCTGGCCCTTTAAGGTTGTCGCTGGGACCAGAGACAAACCAATGATTGCGATCACCTACAAAGGCGAAGAGAAGCACCTTGCAGCAGAAGAGATATCTTCCATGGTGCTGTTTAAGATGAAGGAGGTCGCGGAATCCTATTTGGGTCACGCAGTAAGGGATGCAGTTATCACTGTCCCTGCTTACTTCAGCAACGCGCAGAGACAAGCTACAAAGGATGCTGGGAAAATCGCTGGTTTGAATGTGTTGAGGATCATCAACGAGCCAACCGCAGCTGCCATTGCTTATGGATTGGACAGGAAAGGATTCAGAGAGGGTGATCAGAACGTCCTTGTGTTTGATCTCGGAGGTGGAACATTCGATGTTTCCTTGGTGACAATTGATGAAGGGATGTTTAAGGTTAAGGCCACGGTGGGAGATACTCATTTGGGTGGTGTGGATTTTGATAACAAATTGGTGAACCATCTTGTGAATGTGTTTAGAGAGAAATACGGGAAGGATATCAGTGGGAACGCGAAATCTTTGGTAAGATTAAGGTCAGCATGCGAGAAAGCTAAGAGGATTCTGTCTTCGACTTCCCAGACCATTATAGAGCTTGATTCTTTATATGAAGGGATTGATCTATATGCCTCTGTTACGAGGGCCTTGTTCGAGGAACTGAACAAAGACTTGTTCATTAAGTGTAAGGAGACAGTGGAAAAGTGCCTGGTTGAGGCCAAGGTTGACAAGAGCCAAGTTCATGAGATCGTTCTCGTCGGTGGGTCCACTAGAATTCCAAAGGTACAGCAACTTCTGAAGGACATGTTCAGCGTCAACGGTAACATCAAAGAGCTTTGCAAAAGCATCAACCCTGACGAGGCCGTGGCGTACGGTGCTGCAGTTCAGGCAGCAATTTTGAGCGGTGAAGGAGATAAAAAGGTGGAGGAGTTGTTGTTATTGGACGTGATGCCAATTAGTCTCGGAATTGAGGGTGCTGGTGGTGCCATGTTAGTGTTGATCCCCAAGAACACCGTGATCCCCACCAAGAAGGAGAGGGTTTGTTCGACCTGGTACGACAATCAGAAAAGCCTCACGGTCAAAGTGTTTGAGGGAGAACGAGGCATGGTAAAAGACAACTTCTTTCTCGGCAAGTTTGTCCTCCATGGGTTCGAGCCATCGCTAAAGGGAGTCCCACAAATCAACGTTAGCTTTGACGTGGACGCAGATGGCTTTGTGGAGGTGACGGCGGAAGATAAAGCCACGGGTCTAAAGAAGAAGATAGTGATCAATAACAAGCAAGGAAGGTTGAACCCGGAAGAGATCAGAAAAATGGTGAGGGATTCAAAGAAGTATAGGGCAGAGGATGAGGTGGGGAAGAGGAAGATGAAGGCAAAGAACGCACTTGAGAATTTCGCTTATGAAATGAGGGAGAGAGCGAGAAGGATCGAAGAGGCAGTGGAAGAAACCATAGAGTGGCTAGAGAATAACCAATTAGCAGAGATAGAGGAGTTTGAGTACAAGAAGCAGGAGTTAGGAAGGTATCTAAAAGATGATCCCAATCCGAATAATACCTCAAATTCTGAGGTTAAGGTTCCTATATGGTGTACGTGGAGATGTCCACCCAGTGGGTGGGTTTGTCTGAACACGGATGGGTCGGTGTTTGAGAACCATCGAACAGGGTGTAGCAGAGGTGCGTGCGGGGGTCTAGTTCGAGATTCCGCAGGATGTTTTCTAGGTGGTTTCGGTGTTAATTTGGGGCCCACATCAGTGAAGTTAGCGGAGTTGTGGGGGGTTGTTCACGGTCTGAAGTTAGCGTGGGATCTTGGTTGTAAGAAGGTGAAGGTGGATATTGATTCGAGCCATGCTCTTGGTCTCGTTAGGCACTGTCCAGTGGGTAACGACCCAGCGTTTGCGGTGGTTCAGGAGATCAATGAGCTTGTTCGGAAGGATTGGTTGGTGGAGTTCTCACACGTGTTTAGAGAATCTAATCGTGCGGCTGATCGCTTGGCGCACTTGGGACACTCTCACTCTTTGCAATCGGGTGGGAAGCGATTTTCGGACCCTCCATCTGCCATTGTTGATATTCTTCGAGATGACTTGGCAGGTCTTGCAAAGCAACGCGGCGTTCCTTAG 2382 0.4828 MATEKVKPIGIDLGTTYSCVAVWQDSRVQVISNDQGNRTTPSYVAFTDTQRLLGDDAMNQRFKNPHNTVFDAKRLIGRRFSDMSVQQDMKLWPFKVVAGTRDKPMIAITYKGEEKHLAAEEISSMVLFKMKEVAESYLGHAVRDAVITVPAYFSNAQRQATKDAGKIAGLNVLRIINEPTAAAIAYGLDRKGFREGDQNVLVFDLGGGTFDVSLVTIDEGMFKVKATVGDTHLGGVDFDNKLVNHLVNVFREKYGKDISGNAKSLVRLRSACEKAKRILSSTSQTIIELDSLYEGIDLYASVTRALFEELNKDLFIKCKETVEKCLVEAKVDKSQVHEIVLVGGSTRIPKVQQLLKDMFSVNGNIKELCKSINPDEAVAYGAAVQAAILSGEGDKKVEELLLLDVMPISLGIEGAGGAMLVLIPKNTVIPTKKERVCSTWYDNQKSLTVKVFEGERGMVKDNFFLGKFVLHGFEPSLKGVPQINVSFDVDADGFVEVTAEDKATGLKKKIVINNKQGRLNPEEIRKMVRDSKKYRAEDEVGKRKMKAKNALENFAYEMRERARRIEEAVEETIEWLENNQLAEIEEFEYKKQELGRYLKDDPNPNNTSNSEVKVPIWCTWRCPPSGWVCLNTDGSVFENHRTGCSRGACGGLVRDSAGCFLGGFGVNLGPTSVKLAELWGVVHGLKLAWDLGCKKVKVDIDSSHALGLVRHCPVGNDPAFAVVQEINELVRKDWLVEFSHVFRESNRAADRLAHLGHSHSLQSGGKRFSDPPSAIVDILRDDLAGLAKQRGVP 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00076 793 Gene3D Actin; Chain A, domain 4 234 317 - -
Vium1339g00076 793 Gene3D - 627 757 IPR036397 GO:0003676
Vium1339g00076 793 FunFam Heat shock 70 kDa 234 317 - -
Vium1339g00076 793 Pfam Hsp70 protein 9 597 IPR013126 GO:0005524|GO:0140662
Vium1339g00076 793 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 547 596 IPR029048 -
Vium1339g00076 793 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Vium1339g00076 793 Gene3D - 70 125 - -
Vium1339g00076 793 FunFam Heat shock 70 kDa protein 393 548 - -
Vium1339g00076 793 SUPERFAMILY Actin-like ATPase domain 195 391 IPR043129 -
Vium1339g00076 793 FunFam Heat shock protein 70 9 198 - -
Vium1339g00076 793 PANTHER HEAT SHOCK PROTEIN 70KDA 9 571 IPR013126 GO:0005524|GO:0140662
Vium1339g00076 793 Gene3D - 548 600 IPR029048 -
Vium1339g00076 793 SUPERFAMILY Ribonuclease H-like 626 758 IPR012337 -
Vium1339g00076 793 SUPERFAMILY Actin-like ATPase domain 9 190 IPR043129 -
Vium1339g00076 793 Gene3D - 9 387 - -
Vium1339g00076 793 CDD RNase_H_like 630 754 IPR044730 -
Vium1339g00076 793 FunFam Heat shock 70 kDa protein 70 125 - -
Vium1339g00076 793 PRINTS 70kDa heat shock protein signature 7 20 - -
Vium1339g00076 793 PRINTS 70kDa heat shock protein signature 480 496 - -
Vium1339g00076 793 PRINTS 70kDa heat shock protein signature 145 165 - -
Vium1339g00076 793 PRINTS 70kDa heat shock protein signature 57 65 - -
Vium1339g00076 793 PRINTS 70kDa heat shock protein signature 372 392 - -
Vium1339g00076 793 PRINTS 70kDa heat shock protein signature 399 418 - -
Vium1339g00076 793 PRINTS 70kDa heat shock protein signature 35 47 - -
Vium1339g00076 793 PRINTS 70kDa heat shock protein signature 208 218 - -
Vium1339g00076 793 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 552 IPR029047 -
Vium1339g00076 793 ProSiteProfiles RNase H type-1 domain profile. 624 758 IPR002156 GO:0003676|GO:0004523
Vium1339g00076 793 Pfam Reverse transcriptase-like 631 754 IPR002156 GO:0003676|GO:0004523
Vium1339g00076 793 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Vium1339g00076 793 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Vium1339g00076 793 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 547 IPR029047 -
Vium1339g00076 793 Gene3D - 191 369 - -
Vium1339g00076 793 Coils Coil 559 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00076 Vium-Chr1339 523069 525754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00076 1 594 Calmodulin-binding Proteins AT1G16030 66.283 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00076 K03283 - gmx:100795699 1347.41