Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00070 ATGGGAGTTGCCAGTTTCTTTGTCTTCCTTTTTATTGCTCTAAGTTGCTTCCAATTGCTGACAGTTTCTGCATCAAAATTACCTCAAGAAGAAGTTGATGCCCTTAAAGAAATTGCGAGTGCTATGGGATCGGCATATTGGAAATTTGATGCTGATTCCTGCATTATTGAAATGGTTGGACTAACGCAAGAACCACCAGCTGAATCAGAGAGGAGCATTGTTTGTGATTGCAGTTTTGAAGACAATACTGTCTGTCATGTTGTGAAGATGACTCTCAAGCGGCTTAGTCTACCTGGCACACTCCCACCTCAACTTGCCAAACTACCTTTTCTACAAGATGTAGATTTTGCTTACAATTGTTTCACCGGTTCAATTCCAGAGGAATGGGCTTCAATGAAATTAGCTTCGATTTCTCTTCTTGTGAATCGCTTATCTGGGGAAATTCCAAAGCATCTAGGAAATTTTACAACTCTTACATATATAATGCTTGAAGCAAACCAATTTTCTGGTGCTGTTCCACCTGAGCTTGGGAAACTAATCAACTTGCAGACCTTGGTTCTGTCATCCAATCAATTGACTGGGAACTTACCACTTACACTTGCTGGGCTACAAAATTTGACAGACTTTAGAATAAATGATAACTATTTTACTGGAACAGTACCTAGTTTCATACAGAGCTGGCAACATCTCCAGAGACTAGAAATGCATGCAAGTGGACTAGAGGGACCCTTCCCATCAAATATCTCTCTCTTGAAGAACTTAGTTATGCTAAGAATCAGTGACATAGAAAGTCCTGCGCAGGTCTTTCCTCATCTGGAAAACATGGCAAACTTGACTATATTGATTCTAAGGAGCTGTAACTTATCTGGTGTTATACCTTCATACATCTGGACAATGAAGAATTTGGTGACTTTGGATGTCAGTTTTAACATGCTCGTTGGGGGAATTTCATCAATTATAAGTGCAAGGCGTCTAAGATTTATTTACCTAACAGGTAATATGCTTAGTGGCAATATACCGAATTCAGTCCTGAAGGATGGAAGTAGCATTGATCTATCATACAACAACTTTACTTGGCAAGACTACGAGCAACCTGCTTGTCAGGATGGCATGAACTTGAATCTGAATTTGTTCAGAACCTCGCTTCTGAAGAATAAGTTGGAGGAGTATGTTCCTTGCTACAAGAATTTCAGTTGTTCACGGTTTTCAAGTTGTTTACATGTTAACTGTGGTGGGAAGGATGTAAGGGTAAAAGATGATAGAGGAGAAAAGCTTTATGCCGGAGACGGAGATGTTCAGGGTGGCACTGCAACGTATTTCTACAGTGATGATGATCACTGGGGATTTAGTAGCACTGGGGACTTCATGGATGATTTTGAGTCCCAGAACGTACGCTACATTGTATCTCTTCCATCTTCAAATCTGCCAGAATTATATAAAACGGCGCGTGTATCTCCAATTACACTTACTTATTTCCACAACTGCATGCAAAATGGGAACTATACTGTAAACCTTCACTTTGCAGAGATACAGTTTACAAATGATAGAACATATAAAAGTCTTGGGAAGCGCATATTTGATATCTATGTTCAGGGAAGAATCACTCGCAAAAATTTTAATATAGAGAATGAAACGAATGTTACTGAAAAACCACTGGTACTGCCCATACCCAATATCAGCATCACAAATAATATCTTGGAGATTAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGATGTTGGAGTTTATGGCCCCCTTGTATCAGCTATATCTGTGGTTTCAGATTCTAGAACTTGCTCAAATGGACAAAAGAAAGTTGCTGTTTCGATAATCATTGCCATTGTAGCCGGTGCTGTATGCTTAGTGCTCTTTATATTTGGACTCATTTGGTGGAAGTGGAAAGGCTTTTTCAGAGGGAAACCGCGAAAGAAAGAAGATGCAAAAGATGGAGATATTCAAGCAGGTAATTTTAGCTTGGAGCATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATAGGAGAAGGCGGTTTTGGTCCCGTATACAAGGGTCAATTGGTAGATGGTACTTTTATAGCGGTCAAGCAATTGTCATCAAAATCACGGCAGGGAAATCGGGAATTCATAAATGAAATAGGGTTGATATCTTGTGTGCAACACCCCAACCTCGTAAAGCTTCATGGATACTGTGCTGAAGGGGAACAACTTTTGCTGGTATATGAGTACATGGAAAATAACAGCCTGGCCCGAGCTTTATTTGGTAGTGAGAACCAACAGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCGAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGGGGATTTGAATCCAAAAATATCTGACTTTGGCTTGGCTAGGCTTGATGAAACAGAGAAAACCCATATCAGCACCCGAGTTGCTGGGACTATAGGATATATGGCACCAGAATATGCATTATGGGGCCATCTTAGTTACAAGGCCGATGTTTACAGTTTTGGAGTTGTAGCATTAGAAATTATTAGTGGGAAAAGCAATAACAATTATCTACCAGACGATGGAAGTGCTTGTCTTCTTGATTGGGCATGTCAGTTAAATCAAGCTAAGAAATTAGTGGGGATTGTTGACGAAAGGTTGGGGCCAGACCTTAATGAAACGGAATTAGAAAAGGTGGTCAGAATTGCTCTCCTGTGCACAAATGCTTCTGTATCTCTTAGGCCTACGATGTCTGAGGTGGTGAATATGTTTGAAGGAGAATTAGATATTCCTGATGCAATTCCAGAACCAAGTACCTACAGTGAGGATTTAAGGTTCAAATCCTTAAGGGACCTCCATCAACATCGATCAAAGCAGAGTTTGAGTGGTAATTCATCGTCTCATACATTCAGCTCAGCATCTGGTGGTAATACTCACACTAGCAGTAATATTGAGGATCATTGTTCAACTGACAATAGTTAG 3039 0.4024 MGVASFFVFLFIALSCFQLLTVSASKLPQEEVDALKEIASAMGSAYWKFDADSCIIEMVGLTQEPPAESERSIVCDCSFEDNTVCHVVKMTLKRLSLPGTLPPQLAKLPFLQDVDFAYNCFTGSIPEEWASMKLASISLLVNRLSGEIPKHLGNFTTLTYIMLEANQFSGAVPPELGKLINLQTLVLSSNQLTGNLPLTLAGLQNLTDFRINDNYFTGTVPSFIQSWQHLQRLEMHASGLEGPFPSNISLLKNLVMLRISDIESPAQVFPHLENMANLTILILRSCNLSGVIPSYIWTMKNLVTLDVSFNMLVGGISSIISARRLRFIYLTGNMLSGNIPNSVLKDGSSIDLSYNNFTWQDYEQPACQDGMNLNLNLFRTSLLKNKLEEYVPCYKNFSCSRFSSCLHVNCGGKDVRVKDDRGEKLYAGDGDVQGGTATYFYSDDDHWGFSSTGDFMDDFESQNVRYIVSLPSSNLPELYKTARVSPITLTYFHNCMQNGNYTVNLHFAEIQFTNDRTYKSLGKRIFDIYVQGRITRKNFNIENETNVTEKPLVLPIPNISITNNILEIRFYWAGKGTTRIPDVGVYGPLVSAISVVSDSRTCSNGQKKVAVSIIIAIVAGAVCLVLFIFGLIWWKWKGFFRGKPRKKEDAKDGDIQAGNFSLEHIRAATNDFSSANKIGEGGFGPVYKGQLVDGTFIAVKQLSSKSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMENNSLARALFGSENQQLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDGDLNPKISDFGLARLDETEKTHISTRVAGTIGYMAPEYALWGHLSYKADVYSFGVVALEIISGKSNNNYLPDDGSACLLDWACQLNQAKKLVGIVDERLGPDLNETELEKVVRIALLCTNASVSLRPTMSEVVNMFEGELDIPDAIPEPSTYSEDLRFKSLRDLHQHRSKQSLSGNSSSHTFSSASGGNTHTSSNIEDHCSTDNS 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00070 1012 ProSiteProfiles Protein kinase domain profile. 672 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00070 1012 MobiDBLite consensus disorder prediction 977 1012 - -
Vium1339g00070 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Vium1339g00070 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 979 - -
Vium1339g00070 1012 SMART serkin_6 672 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00070 1012 SUPERFAMILY L domain-like 83 341 - -
Vium1339g00070 1012 Gene3D Transferase(Phosphotransferase) domain 1 748 950 - -
Vium1339g00070 1012 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 386 - -
Vium1339g00070 1012 Pfam Protein tyrosine and serine/threonine kinase 675 942 IPR001245 GO:0004672|GO:0006468
Vium1339g00070 1012 CDD STKc_IRAK 678 945 - -
Vium1339g00070 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 598 - -
Vium1339g00070 1012 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 641 747 - -
Vium1339g00070 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase 748 955 - -
Vium1339g00070 1012 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Vium1339g00070 1012 Gene3D - 403 600 - -
Vium1339g00070 1012 Gene3D Ribonuclease Inhibitor 264 378 IPR032675 -
Vium1339g00070 1012 Pfam Malectin domain 405 593 IPR021720 -
Vium1339g00070 1012 SUPERFAMILY Protein kinase-like (PK-like) 657 965 IPR011009 -
Vium1339g00070 1012 Gene3D Phosphorylase Kinase; domain 1 641 747 - -
Vium1339g00070 1012 Gene3D Ribonuclease Inhibitor 197 263 IPR032675 -
Vium1339g00070 1012 Gene3D Ribonuclease Inhibitor 45 196 IPR032675 -
Vium1339g00070 1012 MobiDBLite consensus disorder prediction 974 1012 - -
Vium1339g00070 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00070 Vium-Chr1339 485298 494168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00070 5 838 Receptor kinase-like Gene Family AT1G29750 58.633 0.0 1030
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1339g00070 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00070 - - qsa:O6P43_032037 1404.81