Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00069 ATGGGAGTTGCCAGTTTCTTTGTCTTCCTTTTTATTGCTCTAAGTTGCTTCCAATTGCTGACAGTTTCTGCATCAAAATTACCTCAAGAAGAAGTTGATGCCCTTAAAGAAATTGCGAGTGCTATGGGATCGGCATATTGGAAATTTGATGCTGATTCCTGCATTATTGAAATGGTTGGACTAACGCAAGAACCACCAGCTGAATCAGAGAGGAGCATTGTTTGTGATTGCAGTTTTGAAGACAATACTGTCTGTCATGTTGTGAAGATGACTCTCAAGCGGCTTAGTCTACCTGGCACACTCCCACCTCAACTTGCCAAACTACCTTTTCTACAAGATGTAGATTTTGCTTACAATTGTTTCACCGGTTCAATTCCAGAGGAATGGGCTTCAATGAAATTAGCTTCGATTTCTCTTCTTGTGAATCGCTTATCTGGGGAAATTCCAAAGCATCTAGGAAATTTTACAACTCTTACATATATAATGCTTGAAGCAAACCAATTTTCTGGTGCTGTTCCACCTGAGCTTGGGAAACTAATCAACTTGCAGACCTTGGTTCTGTCATCCAATCAATTGACTGGGAACTTACCACTTACACTTGCTGGGCTACAAAATTTGACAGACTTTAGAATAAATGATAACTATTTTACTGGAACAGTACCTAGTTTCATACAGAGCTGGCAACATCTCCAGAGACTAGAAATGCATGCAAGTGGACTAGAGGGACCCTTCCCATCAAATATCTCTCTCTTGAAGAACTTAGTTATGCTAAGAATCAGTGACATAGAAAGTCCTGCGCAGGTCTTTCCTCATCTGGAAAACATGGCAAACTTGACTATATTGATTCTAAGGAGCTGTAACTTATCTGGTGTTATACCTTCATACATCTGGACAATGAAGAATTTGGTGACTTTGGATGTCAGTTTTAACATGCTCGTTGGGGGAATTTCATCAATTATAAGTGCAAGGCGTCTAAGATTTATTTACCTAACAGGTAATATGCTTAGTGGCAATATACCGAATTCAGTCCTGAAGGATGGAAGTAGCATTGATCTATCATACAACAACTTTACTTGGCAAGACTACGAGCAACCTGCTTGTCAGGATGGCATCAGGAACTTGAATCTGAATTTGTTCAGAACCTCGCTTCTGAAGAATAAGTTGGAGGAGTATGTTCCTTGCTACAAGAATTTCAGTTGTTCACGGTTTTCAAGTTGTTTACATGTTAACTGTGGTGGGAAGGATGTAAGGGTAAAAGATGATAGAGGAGAAAAGCTTTATGCCGGAGACGGAGATGTTCAGGGTGGCACTGCAACGTATTTCTACAGTGATGATGATCACTGGGGATTTAGTAGCACTGGGGACTTCATGGATGATTTTGAGTCCCAGAACGTACGCTACATTGTATCTCTTCCATCTTCAAATCTGCCAGAATTATATAAAACGGCGCGTGTATCTCCAATTACACTTACTTATTTCCACAACTGCATGCAAAATGGGAACTATACTGTAAACCTTCACTTTGCAGAGATACAGTTTACAAATGATAGAACATATAAAAGTCTTGGGAAGCGCATATTTGATATCTATGTTCAGGGAAGAATCACTCGCAAAAATTTTAATATAGAGAATGAAACGAATGTTACTGAAAAACCACTGGTACTGCCCATACCCAATATCAGCATCACAAATAATATCTTGGAGATTAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGATGTTGGAGTTTATGGCCCCCTTGTATCAGCTATATCTGTGGTTTCAGATTCTAGAACTTGCTCAAATGGACAAAAGAAAGTTGCTGTTTCGATAATCATTGCCATTGTAGCCGGTGCTGTATGCTTAGTGCTCTTTATATTTGGACTCATTTGGTGGAAGTGGAAAGGCTTTTTCAGAGGGAAACCGCGAAAGAAAGAAGATGCAAAAGATGGAGATATTCAAGCAGGTAATTTTAGCTTGGAGCATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATAGGAGAAGGCGGTTTTGGTCCCGTATACAAGGGTCAATTGGTAGATGGTACTTTTATAGCGGTCAAGCAATTGTCATCAAAATCACGGCAGGGAAATCGGGAATTCATAAATGAAATAGGGTTGATATCTTGTGTGCAACACCCCAACCTCGTAAAGCTTCATGGATACTGTGCTGAAGGGGAACAACTTTTGCTGGTATATGAGTACATGGAAAATAACAGCCTGGCCCGAGCTTTATTTGGTAGTGAGAACCAACAGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCGAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGGGGATTTGAATCCAAAAATATCTGACTTTGGCTTGGCTAGGCTTGATGAAACAGAGAAAACCCATATCAGCACCCGAGTTGCTGGGACTATAGGATATATGGCACCAGAATATGCATTATGGGGCCATCTTAGTTACAAGGCCGATGTTTACAGTTTTGGAGTTGTAGCATTAGAAATTATTAGTGGGAAAAGCAATAACAATTATCTACCAGACGATGGAAGTGCTTGTCTTCTTGATTGGGCATGTCAGTTAAATCAAGCTAAGAAATTAGTGGGGATTGTTGACGAAAGGTTGGGGCCAGACCTTAATGAAACGGAATTAGAAAAGGTGGTCAGAATTGCTCTCCTGTGCACAAATGCTTCTGTATCTCTTAGGCCTACGATGTCTGAGGTGGTGAATATGTTTGAAGGAGAATTAGATATTCCTGATGCAATTCCAGAACCAAGTACCTACAGTGAGGATTTAAGGTTCAAATCCTTAAGGGACCTCCATCAACATCGATCAAAGCAGAGTTTGAGTGGTAATTCATCGTCTCATACATTCAGCTCAGCATCTGGTGGTAATACTCACACTAGCAGTAATATTGAGGATCATTGTTCAACTGACAATAGTTAG 3042 0.4027 MGVASFFVFLFIALSCFQLLTVSASKLPQEEVDALKEIASAMGSAYWKFDADSCIIEMVGLTQEPPAESERSIVCDCSFEDNTVCHVVKMTLKRLSLPGTLPPQLAKLPFLQDVDFAYNCFTGSIPEEWASMKLASISLLVNRLSGEIPKHLGNFTTLTYIMLEANQFSGAVPPELGKLINLQTLVLSSNQLTGNLPLTLAGLQNLTDFRINDNYFTGTVPSFIQSWQHLQRLEMHASGLEGPFPSNISLLKNLVMLRISDIESPAQVFPHLENMANLTILILRSCNLSGVIPSYIWTMKNLVTLDVSFNMLVGGISSIISARRLRFIYLTGNMLSGNIPNSVLKDGSSIDLSYNNFTWQDYEQPACQDGIRNLNLNLFRTSLLKNKLEEYVPCYKNFSCSRFSSCLHVNCGGKDVRVKDDRGEKLYAGDGDVQGGTATYFYSDDDHWGFSSTGDFMDDFESQNVRYIVSLPSSNLPELYKTARVSPITLTYFHNCMQNGNYTVNLHFAEIQFTNDRTYKSLGKRIFDIYVQGRITRKNFNIENETNVTEKPLVLPIPNISITNNILEIRFYWAGKGTTRIPDVGVYGPLVSAISVVSDSRTCSNGQKKVAVSIIIAIVAGAVCLVLFIFGLIWWKWKGFFRGKPRKKEDAKDGDIQAGNFSLEHIRAATNDFSSANKIGEGGFGPVYKGQLVDGTFIAVKQLSSKSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMENNSLARALFGSENQQLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDGDLNPKISDFGLARLDETEKTHISTRVAGTIGYMAPEYALWGHLSYKADVYSFGVVALEIISGKSNNNYLPDDGSACLLDWACQLNQAKKLVGIVDERLGPDLNETELEKVVRIALLCTNASVSLRPTMSEVVNMFEGELDIPDAIPEPSTYSEDLRFKSLRDLHQHRSKQSLSGNSSSHTFSSASGGNTHTSSNIEDHCSTDNS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00069 1013 SUPERFAMILY L domain-like 83 341 - -
Vium1339g00069 1013 SMART serkin_6 673 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00069 1013 Gene3D - 404 601 - -
Vium1339g00069 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 642 748 - -
Vium1339g00069 1013 CDD STKc_IRAK 679 946 - -
Vium1339g00069 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 749 956 - -
Vium1339g00069 1013 Pfam Protein tyrosine and serine/threonine kinase 676 943 IPR001245 GO:0004672|GO:0006468
Vium1339g00069 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 387 - -
Vium1339g00069 1013 Pfam Malectin domain 406 594 IPR021720 -
Vium1339g00069 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672|GO:0006468
Vium1339g00069 1013 Gene3D Ribonuclease Inhibitor 264 369 IPR032675 -
Vium1339g00069 1013 Gene3D Transferase(Phosphotransferase) domain 1 749 951 - -
Vium1339g00069 1013 Gene3D Ribonuclease Inhibitor 197 263 IPR032675 -
Vium1339g00069 1013 Gene3D Ribonuclease Inhibitor 45 196 IPR032675 -
Vium1339g00069 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Vium1339g00069 1013 MobiDBLite consensus disorder prediction 975 1013 - -
Vium1339g00069 1013 Gene3D Phosphorylase Kinase; domain 1 642 748 - -
Vium1339g00069 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 599 - -
Vium1339g00069 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 980 - -
Vium1339g00069 1013 SUPERFAMILY Protein kinase-like (PK-like) 658 966 IPR011009 -
Vium1339g00069 1013 MobiDBLite consensus disorder prediction 978 1013 - -
Vium1339g00069 1013 ProSiteProfiles Protein kinase domain profile. 673 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00069 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00069 Vium-Chr1339 485298 494168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00069 5 839 Receptor kinase-like Gene Family AT1G29750 58.443 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1339g00069 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00069 - - qsa:O6P43_032037 1400.19