Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00068 ATGGGAGTTGCCAGTTTCTTTGTCTTCCTTTTTATTGCTCTAAGTTGCTTCCAATTGCTGACAGTTTCTGCATCAAAATTACCTCAAGAAGAAGTTGATGCCCTTAAAGAAATTGCGAGTGCTATGGGATCGGCATATTGGAAATTTGATGCTGATTCCTGCATTATTGAAATGGTTGGACTAACGCAAGAACCACCAGCTGAATCAGAGAGGAGCATTGTTTGTGATTGCAGTTTTGAAGACAATACTGTCTGTCATGTTGTGAAGATGACTCTCAAGCGGCTTAGTCTACCTGGCACACTCCCACCTCAACTTGCCAAACTACCTTTTCTACAAGATGTAGATTTTGCTTACAATTGTTTCACCGGTTCAATTCCAGAGGAATGGGCTTCAATGAAATTAGCTTCGATAATGCTTGAAGCAAACCAATTTTCTGGTGCTGTTCCACCTGAGCTTGGGAAACTAATCAACTTGCAGACCTTGGTTCTGTCATCCAATCAATTGACTGGGAACTTACCACTTACACTTGCTGGGCTACAAAATTTGACAGACTTTAGAATAAATGATAACTATTTTACTGGAACAGTACCTAGTTTCATACAGAGCTGGCAACATCTCCAGAGACTAGAAATGCATGCAAGTGGACTAGAGGGACCCTTCCCATCAAATATCTCTCTCTTGAAGAACTTAGTTATGCTAAGAATCAGTGACATAGAAAGTCCTGCGCAGGTCTTTCCTCATCTGGAAAACATGGCAAACTTGACTATATTGATTCTAAGGAGCTGTAACTTATCTGGTGTTATACCTTCATACATCTGGACAATGAAGAATTTGGTGACTTTGGATGTCAGTTTTAACATGCTCGTTGGGGGAATTTCATCAATTATAAGTGCAAGGCGTCTAAGATTTATTTACCTAACAGGTAATATGCTTAGTGGCAATATACCGAATTCAGTCCTGAAGGATGGAAGTAGCATTGATCTATCATACAACAACTTTACTTGGCAAGACTACGAGCAACCTGCTTGTCAGGATGGCATCAGGAACTTGAATCTGAATTTGTTCAGAACCTCGCTTCTGAAGAATAAGTTGGAGGAGTATGTTCCTTGCTACAAGAATTTCAGTTGTTCACGGTTTTCAAGTTGTTTACATGTTAACTGTGGTGGGAAGGATGTAAGGGTAAAAGATGATAGAGGAGAAAAGCTTTATGCCGGAGACGGAGATGTTCAGGGTGGCACTGCAACGTATTTCTACAGTGATGATGATCACTGGGGATTTAGTAGCACTGGGGACTTCATGGATGATTTTGAGTCCCAGAACGTACGCTACATTGTATCTCTTCCATCTTCAAATCTGCCAGAATTATATAAAACGGCGCGTGTATCTCCAATTACACTTACTTATTTCCACAACTGCATGCAAAATGGGAACTATACTGTAAACCTTCACTTTGCAGAGATACAGTTTACAAATGATAGAACATATAAAAGTCTTGGGAAGCGCATATTTGATATCTATGTTCAGGGAAGAATCACTCGCAAAAATTTTAATATAGAGAATGAAACGAATGTTACTGAAAAACCACTGGTACTGCCCATACCCAATATCAGCATCACAAATAATATCTTGGAGATTAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGATGTTGGAGTTTATGGCCCCCTTGTATCAGCTATATCTGTGGTTTCAGATTCTAGAACTTGCTCAAATGGACAAAAGAAAGTTGCTGTTTCGATAATCATTGCCATTGTAGCCGGTGCTGTATGCTTAGTGCTCTTTATATTTGGACTCATTTGGTGGAAGTGGAAAGGCTTTTTCAGAGGGAAACCGCGAAAGAAAGAAGATGCAAAAGATGGAGATATTCAAGCAGGTAATTTTAGCTTGGAGCATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATAGGAGAAGGCGGTTTTGGTCCCGTATACAAGGGTCAATTGGTAGATGGTACTTTTATAGCGGTCAAGCAATTGTCATCAAAATCACGGCAGGGAAATCGGGAATTCATAAATGAAATAGGGTTGATATCTTGTGTGCAACACCCCAACCTCGTAAAGCTTCATGGATACTGTGCTGAAGGGGAACAACTTTTGCTGGTATATGAGTACATGGAAAATAACAGCCTGGCCCGAGCTTTATTTGGTAGTGAGAACCAACAGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCGAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGGGGATTTGAATCCAAAAATATCTGACTTTGGCTTGGCTAGGCTTGATGAAACAGAGAAAACCCATATCAGCACCCGAGTTGCTGGGACTATAGGATATATGGCACCAGAATATGCATTATGGGGCCATCTTAGTTACAAGGCCGATGTTTACAGTTTTGGAGTTGTAGCATTAGAAATTATTAGTGGGAAAAGCAATAACAATTATCTACCAGACGATGGAAGTGCTTGTCTTCTTGATTGGGCATGTCAGTTAAATCAAGCTAAGAAATTAGTGGGGATTGTTGACGAAAGGTTGGGGCCAGACCTTAATGAAACGGAATTAGAAAAGGTGGTCAGAATTGCTCTCCTGTGCACAAATGCTTCTGTATCTCTTAGGCCTACGATGTCTGAGGTGGTGAATATGTTTGAAGGAGAATTAGATATTCCTGATGCAATTCCAGAACCAAGTACCTACAGTGAGGATTTAAGGTTCAAATCCTTAAGGGACCTCCATCAACATCGATCAAAGCAGAGTTTGAGTGGTAATTCATCGTCTCATACATTCAGCTCAGCATCTGGTGGTAATACTCACACTAGCAGTAATATTGAGGATCATTGTTCAACTGACAATAGTTAG 2970 0.4044 MGVASFFVFLFIALSCFQLLTVSASKLPQEEVDALKEIASAMGSAYWKFDADSCIIEMVGLTQEPPAESERSIVCDCSFEDNTVCHVVKMTLKRLSLPGTLPPQLAKLPFLQDVDFAYNCFTGSIPEEWASMKLASIMLEANQFSGAVPPELGKLINLQTLVLSSNQLTGNLPLTLAGLQNLTDFRINDNYFTGTVPSFIQSWQHLQRLEMHASGLEGPFPSNISLLKNLVMLRISDIESPAQVFPHLENMANLTILILRSCNLSGVIPSYIWTMKNLVTLDVSFNMLVGGISSIISARRLRFIYLTGNMLSGNIPNSVLKDGSSIDLSYNNFTWQDYEQPACQDGIRNLNLNLFRTSLLKNKLEEYVPCYKNFSCSRFSSCLHVNCGGKDVRVKDDRGEKLYAGDGDVQGGTATYFYSDDDHWGFSSTGDFMDDFESQNVRYIVSLPSSNLPELYKTARVSPITLTYFHNCMQNGNYTVNLHFAEIQFTNDRTYKSLGKRIFDIYVQGRITRKNFNIENETNVTEKPLVLPIPNISITNNILEIRFYWAGKGTTRIPDVGVYGPLVSAISVVSDSRTCSNGQKKVAVSIIIAIVAGAVCLVLFIFGLIWWKWKGFFRGKPRKKEDAKDGDIQAGNFSLEHIRAATNDFSSANKIGEGGFGPVYKGQLVDGTFIAVKQLSSKSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMENNSLARALFGSENQQLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDGDLNPKISDFGLARLDETEKTHISTRVAGTIGYMAPEYALWGHLSYKADVYSFGVVALEIISGKSNNNYLPDDGSACLLDWACQLNQAKKLVGIVDERLGPDLNETELEKVVRIALLCTNASVSLRPTMSEVVNMFEGELDIPDAIPEPSTYSEDLRFKSLRDLHQHRSKQSLSGNSSSHTFSSASGGNTHTSSNIEDHCSTDNS 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00068 989 MobiDBLite consensus disorder prediction 951 989 - -
Vium1339g00068 989 Gene3D Phosphorylase Kinase; domain 1 618 724 - -
Vium1339g00068 989 SUPERFAMILY Protein kinase-like (PK-like) 634 942 IPR011009 -
Vium1339g00068 989 FunFam Putative LRR receptor-like serine/threonine-protein kinase 725 932 - -
Vium1339g00068 989 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 956 - -
Vium1339g00068 989 SUPERFAMILY L domain-like 84 334 - -
Vium1339g00068 989 Gene3D Transferase(Phosphotransferase) domain 1 725 927 - -
Vium1339g00068 989 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 172 239 - -
Vium1339g00068 989 MobiDBLite consensus disorder prediction 954 989 - -
Vium1339g00068 989 Gene3D Ribonuclease Inhibitor 242 343 IPR032675 -
Vium1339g00068 989 SMART serkin_6 649 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00068 989 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 241 363 - -
Vium1339g00068 989 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 618 724 - -
Vium1339g00068 989 Gene3D Ribonuclease Inhibitor 28 241 IPR032675 -
Vium1339g00068 989 CDD STKc_IRAK 655 922 - -
Vium1339g00068 989 Gene3D - 380 577 - -
Vium1339g00068 989 Pfam Malectin domain 382 570 IPR021720 -
Vium1339g00068 989 ProSiteProfiles Protein kinase domain profile. 649 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00068 989 Pfam Protein tyrosine and serine/threonine kinase 652 919 IPR001245 GO:0004672|GO:0006468
Vium1339g00068 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Vium1339g00068 989 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 380 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00068 Vium-Chr1339 485298 494169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00068 5 815 Receptor kinase-like Gene Family AT1G29750 56.355 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1339g00068 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00068 - - qsa:O6P43_032037 1350.11