Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00057 ATGTCGGTGGTGGCTGATAATTCCGCAAACGGTGGAAACCACCAGGTTGTTTTAAATGTGAACGGCGAAACCCCCAAAAAGTGTGATCCCTCAACCAACCAAGACTGTGTTCCTCTCTTGCAGAAGTTGGTGGCAGAGGTGGTGGGAACGTACTTTTTGATATTTGCAGGGTGTGCTTCGGTGGTGGTGAACCTTGACAAGGACAGAGTGATAACACAACCAGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTTAATCCTGCTGTAACCATTGCTCATGCTTCCACCAGAAGGTTCCCACTGAAGCAGGTACCGGCTTATGTGATAGCTCAGGTGGTTGGATCCACACTTGCCAGCGGAACTCTGAGACTTCTATTCAATGGCAAGAATGACCATTTCACAGGAACACTCCCCGCTGGTTCTGACTTACAATCTTTTGTGATCGAATTCATAATCACTTTTTATCTCATGTTTGTCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCAGGGCTTGCAGTTGGATCGACGGTACTGCTAAATGTGATGTTTGCCGGGCCAATCACAGGGGCATCGATGAATCCAGCAAGAAGCTTAGGGCCAGCAATTGTGCACAATGAGTACAGAGGAATATGGATATATCTGGTGTCAACAACTCTTGGAGCTGTGGCGGGTGCATGGGCCTACAATTTCATCAGATACACTAACAAGCCAGTGCGTGAAATCACCCAGAGTGCCTCTTTCCTCAAAGGTGATCAAGCCCACTGA 822 0.4732 MSVVADNSANGGNHQVVLNVNGETPKKCDPSTNQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDRVITQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTRRFPLKQVPAYVIAQVVGSTLASGTLRLLFNGKNDHFTGTLPAGSDLQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHNEYRGIWIYLVSTTLGAVAGAWAYNFIRYTNKPVREITQSASFLKGDQAH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00057 273 Gene3D Glycerol uptake facilitator protein. 5 264 IPR023271 -
Vium1339g00057 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1339g00057 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1339g00057 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1339g00057 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1339g00057 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1339g00057 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1339g00057 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1339g00057 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Vium1339g00057 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1339g00057 273 NCBIfam MIP family channel protein 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1339g00057 273 SUPERFAMILY Aquaporin-like 37 262 IPR023271 -
Vium1339g00057 273 PANTHER AQUAPORIN NIP2-1 27 267 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00057 Vium-Chr1339 414929 417409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00057 37 268 Major Intrinsic Protein MIP AT5G37820 62.931 3.01e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00057 K09874 - gmx:100812577 507.679