Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00045 ATGATGGAGGAAGCTCAGGGCAATTCTAGTTCCTTGCCTCCATTCCTCAGTAAGACTTATGACATGGTGGATGATCCTTCCACCAATTCCATTGTTTCCTGGAGCGTCACCAATAAGAGTTTCGTTGTTTGGAACCCACCAGAGTTTTCAAGGGATTTGTTACCCAGATTCTTTAAGCACAGTAACTTCTCCAGTTTTATCAGGCAGCTCAACACTTATGGGTTTAGAAAGATTGATCCTGAACTATGGGAATTTGCCAATGAGGGTTTTGTGAGAGGTCAGCCACATCTTTTGAAGAATATTCATAGGCGTAAACCAGTTCATAGCCATTCTTTGCAGAATATTCAGGGTCAGGGATCTTCTTCACTGACTGAATCAGAAAGACAGAGTTTCAAGGATGAGATAAAGAAGCTTAAAGATGAAAAAGATCAAGTACTTCGGGAGCTAGAGAGGCATGAACAGGAGTGGAAAATGTATGAGGTACAACTACAATATTCAAATGATCGATTGGAACAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTTTCTGAAGTGCTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCCACTGACAGAAAAAGGGGATAGAAAACGTAGGTTGCCAAGAAGTGGTATCTTCAGTGACGATGCTGGCATTGATGATCATATGGAAACTTCCTCTGTATTACCTGGGGTAAATGCAGAGGGTGCCTCTATTTTCGCCCCAAACATGGAGCGATTTGATCTACTTGAGTCGTCCATTATGTTTTGGGAGAATATTGCACATGATGTTCAAATTCACGTGAACATGGATTTTGATGAAACGACAAGTTGTGCAGATAGTCCACCTATATCTTCTGTGCAGCTGGAGGTTGAAGTTCAACCTAAGTCACCTGGAACCAACGTGAATTCTGAGTCCGCTGTAGCTGCTGTTTCTGATCTTGATGCATCAAAAGAACCACCTGTGGGAACAGTTTCTGTGGCTGCTGGTGTTAATGATATATTCTGGGAACGTTTCTTGACAGAGAATCCTGGTTCTGAGAATCAGGAAGTGCATTCTGAAAGGAAAGATTCTGATGGCAGAAGTAATGCCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG 1161 0.4186 MMEEAQGNSSSLPPFLSKTYDMVDDPSTNSIVSWSVTNKSFVVWNPPEFSRDLLPRFFKHSNFSSFIRQLNTYGFRKIDPELWEFANEGFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGSSSLTESERQSFKDEIKKLKDEKDQVLRELERHEQEWKMYEVQLQYSNDRLEQLEKKQENLVSSVSEVLQKPGIALNLLPLTEKGDRKRRLPRSGIFSDDAGIDDHMETSSVLPGVNAEGASIFAPNMERFDLLESSIMFWENIAHDVQIHVNMDFDETTSCADSPPISSVQLEVEVQPKSPGTNVNSESAVAAVSDLDASKEPPVGTVSVAAGVNDIFWERFLTENPGSENQEVHSERKDSDGRSNAKFWWNIRNVNNPPEQMGHS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00045 386 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1339g00045 386 FunFam Heat shock transcription factor 1 8 105 - -
Vium1339g00045 386 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1339g00045 386 MobiDBLite consensus disorder prediction 351 365 - -
Vium1339g00045 386 Coils Coil 170 190 - -
Vium1339g00045 386 Coils Coil 121 162 - -
Vium1339g00045 386 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1339g00045 386 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Vium1339g00045 386 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1339g00045 386 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1339g00045 386 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1339g00045 386 MobiDBLite consensus disorder prediction 348 367 - -
Vium1339g00045 386 Gene3D - 7 105 IPR036388 -
Vium1339g00045 386 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 217 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00045 Vium-Chr1339 335946 338889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00045 9 385 HSF AT4G18880 50.761 2.84e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium1339g00045 HSF_DNA-bind 5.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00045 K09419 - gmx:100784280 638.262