Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00044 ATGATGAAGTGGGGAGGAAGAAATCATTCTTCAACTTCCTCTTCTTCTGTCTCTTCCTTCATTTCTCATGCATCTTCTTTCTCTTGGTTCTCCAAGTTCAAGAATATGAGAATCAATTCGGAGCCAAGTGCTGCAAAAATGAAGCACAAGACAAAGCCCAGTAGTTCACCTCAATATTTCTGTGAGATTGGAGATAGAAGATGTTGTGTAAAGGATGATCGTGATTTCTGTAGACAACCTTTAAATGAAGAGAGTTATGAGGATAAGAAGAATAAAGATATTGATGAGAGTGTGATTCCCTCCTCAAGTTGCTTTGGTGGTAGAAGGGATGCTAAAGGCACACTCGAGTTAAAGGAGAGGGATATTGGTCAAGGAGAAGAAAGAAAGTTGGTGGATGATGGGAAGGTTTCAAAGAAGATGGATGTGTACAATAGAGAAAAGGAATATGAAAACTTAAGGAAGAGATTTGAGAGAAAAGCCAAAAAGGCTTTTCAAGACCAACTCTTGACACTTGAAAGAGAAGTTGAGGAACTTAAGTTTGGATCCAGTAAAGCAGTGGAAAAAGATGCGTTGCAATTTGGATCACCTAGAACAATTTGCACCCCAAGAACACACGCTTTTTCTTCTTCAGCAATTTCAAGGAATCCCATCCTTGGAAATGTTATAGAAAATTTTGAGAAAAATGAAAGGCTGTCTCACAAGAAAATGAGTTCTGAGAGGCAGAACTTGAAACAAACTGAGGAGACGAAGGTAAAGACCAACAGGAATAAACAATCACATCATCTCAACAGAGAACATCAGAGGAGGAAACAAAAGCCGAGCTCTAGGGTCAAAATACATTCTCCAAGGATGGTTTCTAAGGTTGAAATTTGCAAAATAAAGGCCCTGGAAGACATGAAGAAAGCCAAACTAAAGATGAAGAAAGAAAAGGAAGAGATTGTGGAGGAAGTACCAGTATTAGAAAGCTTTGCTGTGATTAAGTCTTCAATAGATCCAATGCAAGATTTCAGAGACTCGATGATTGAGATGATCATAGAGAATCGGATTATTCAGCCAGAAGAAATGGAAGATCTTTTGGTATGTTATCTGACTTTGAATGCAGATGAATATCATGATCTCATCATCAAAGTGTTCAGGAAGGTATGGTTTGACATGAGCCAAGGTATTTTGGGTATTAAACTAAACATGCAATGTGGTTACTATGAATAA 1209 0.3805 MMKWGGRNHSSTSSSSVSSFISHASSFSWFSKFKNMRINSEPSAAKMKHKTKPSSSPQYFCEIGDRRCCVKDDRDFCRQPLNEESYEDKKNKDIDESVIPSSSCFGGRRDAKGTLELKERDIGQGEERKLVDDGKVSKKMDVYNREKEYENLRKRFERKAKKAFQDQLLTLEREVEELKFGSSKAVEKDALQFGSPRTICTPRTHAFSSSAISRNPILGNVIENFEKNERLSHKKMSSERQNLKQTEETKVKTNRNKQSHHLNREHQRRKQKPSSRVKIHSPRMVSKVEICKIKALEDMKKAKLKMKKEKEEIVEEVPVLESFAVIKSSIDPMQDFRDSMIEMIIENRIIQPEEMEDLLVCYLTLNADEYHDLIIKVFRKVWFDMSQGILGIKLNMQCGYYE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00044 402 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 187 386 IPR038933 GO:0045892
Vium1339g00044 402 MobiDBLite consensus disorder prediction 232 280 - -
Vium1339g00044 402 NCBIfam uncharacterized plant-specific domain TIGR01568 323 385 IPR006458 -
Vium1339g00044 402 Coils Coil 292 316 - -
Vium1339g00044 402 Coils Coil 236 256 - -
Vium1339g00044 402 ProSiteProfiles OVATE domain profile. 325 384 IPR006458 -
Vium1339g00044 402 MobiDBLite consensus disorder prediction 261 277 - -
Vium1339g00044 402 Coils Coil 146 166 - -
Vium1339g00044 402 Pfam Transcriptional repressor, ovate 329 385 IPR006458 -
Vium1339g00044 402 MobiDBLite consensus disorder prediction 232 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00044 Vium-Chr1339 329726 331184 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium1339g00044 Ovate 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00044 - - gmx:102666239 522.316