Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00042 ATGGCTTCAGGAGCAATTTTCTCGTCGCTCAGGCGGAGGAGGTCGCCGACGTTGGACGCGTTTCTGGCCCCCGTTGACTTAAGTGACGTCGCTTTGGTTCAGACCCTTCTCTCCGTTGCCCGCGAGATTGTGTCATGTTTTTCTAACCGTTGCTTCTTCTTCCAGCGCAAGAACTCGCGGTCTCTGATCCGACGAGTCGAGGCTTTCCAGTCGCTTTTGGAGTATTTGCGTGATTCCGATTCAGGTTCTTCTTGTCTTCCACCCACGGCGGTGCTTTGTCTCAAGGAGCTTTACCTCTTGCTCTACCGCTCCAAGATTCTCCTCGATTACTGCGCCCAATCTAGTAAGTTGTGGCTCTTGCTTCAGAACCATTCCATCTCTGGTCACTTCCACGATTTGAACCAGGAAATTTCGACCCTTTTGGATGTTTTTCCCGTTAAGGATGTGTTGTTGAGTAAGGATATTAGGGAACAGGTTCAGCTCTTGCAGAAGCAGTCGAGGAGAGCTAAGCTTTTTATAGATATGAAGGACGATGCTCTCAGGATTCTTTTCTTTTCCTTTCTTGACGAGTTTGATAATGGAAGGATTCCTGATTCTGCTGAATTGAGATCTTTCTATGTTGAGAAGTTGCAGATTGTGGATGCAGATAGTTGTAGGACTGAAATTGAGGCCTTGGAGGAGCAGATTGTTAATCACGAGGGTGACATTGAGCCTACTATTTCTGTGCTTAATGGGTTGGTGGCTATGACTAGGTATTGCAGGTTTTTGCTTTTTGGCTTTGAGGAGGATGAACTTGGTCAAGAGAACGGGAGTCGGAAGAAACCTAAGAAGAGGATGATTACTCGGGAAATTGCAGAAACCTTTTTTACTGTTCCTAAGGACTTCTCCTGTCCAATTTCGTTGGATTTGATGAGAGATCCTGTAATTATTTCCACTGGTCAAACATACGACAGGAGTTCCATTTCAAGGTGGATGGAAGAAGGGCACACTACTTGTCCCAAAACAGGTCAATTGCTTGCACACACTCGCCTTGTTCCGAACCGTGCTCTGAGGAATTTGATTGTGCAGTGGTGCACCGCACATGGAGTTCCTCTCGATCCATCGGAGGTCATGGATGCGATGGGTGAAGGTTTTACAACAGCTTGTCCTACCAAAGCTGCCGTTGAAGCAAACAGAGCCACAGCGAAGCTTCTTATTCAGCAGCTTGCTGGAGGTTCTCAGGCTGGGAAGACTGTGGCTGCTCGGGAGATTAGGTTGCTTGCAAAAACGGGAAAGGAAAACCGCTCATTCATTGCAGAAGCAGGGGCGATTCCCTATCTTAGGAATTTACTTTCATCGCCCAATGCTGTCGCTCAGGAGAATTCCGTGACTGCACTGCTCAATTTGTCCATTTTTGACAAGAACAAAAGTAGGATCATGGACGAGGAAGGGTGTCTAGGATCAATTGTTGATGTGTTGAGATTTGGACACACCACAGAGGCAAGGGAAAATGCTGCTGCAACGTTGTTCAGCCTATCGGCCGTCCATGACTATAAGAAAATAATTGCAGATGAGATGGGAGCAGTTGAGGCCCTGGCAGGGCTGTTGCGAGAGGGGACTCCAAGAGGAAAGAAGGATGCTGTGACAGCTTTGTTCAATCTTTCCACACACCCTGAGAATTGTGGTAGAATGATAGAAGCCGGGGCAGTGACAGCACTTGTTGGTGCTTTGGGGAATGAAGGAGTTGCAGAAGAAGCAGCCGGTGCTCTGGTGTTGATCGTCCGGCAGCCTATTGGGGCCAAAGCAGTGGTAAATGAGGAGGCAGCAGTTGCTGGTTTGATCGGAATGATGCGTTGTGGAACGCCGAGAGGTAAAGAGAACGCGGTTGCAGCATTGCTTGAGTTATGCCGGAGTGGAGGATCAGTTGCAACAGAAAGAGTCGTGAAGGCGCCAGCTTTGGCTGGCTTACTTCAAACCCTTCTTTTTACAGGGACAAAACGTGCAAGAAGAAAAGCAGCTTCACTTGCGAGAGTGTTTCAAAGATGTGAGCATGCATCTTTACCTTACGGTGGATTAGGTGTAGGCTACGCATTTGCTGACAATTCAACTACGGCCAGGGAAGCCAGCTTTGCCGGTGATGTTTCAGTACCAATGTCCATTTCTGTTTTATAG 2151 0.4788 MASGAIFSSLRRRRSPTLDAFLAPVDLSDVALVQTLLSVAREIVSCFSNRCFFFQRKNSRSLIRRVEAFQSLLEYLRDSDSGSSCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVLLSKDIREQVQLLQKQSRRAKLFIDMKDDALRILFFSFLDEFDNGRIPDSAELRSFYVEKLQIVDADSCRTEIEALEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFEEDELGQENGSRKKPKKRMITREIAETFFTVPKDFSCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQLLAHTRLVPNRALRNLIVQWCTAHGVPLDPSEVMDAMGEGFTTACPTKAAVEANRATAKLLIQQLAGGSQAGKTVAAREIRLLAKTGKENRSFIAEAGAIPYLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADEMGAVEALAGLLREGTPRGKKDAVTALFNLSTHPENCGRMIEAGAVTALVGALGNEGVAEEAAGALVLIVRQPIGAKAVVNEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSVATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHASLPYGGLGVGYAFADNSTTAREASFAGDVSVPMSISVL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00042 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Vium1339g00042 716 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Vium1339g00042 716 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
Vium1339g00042 716 SMART arm_5 509 549 IPR000225 GO:0005515
Vium1339g00042 716 SMART arm_5 424 464 IPR000225 GO:0005515
Vium1339g00042 716 SMART arm_5 550 588 IPR000225 GO:0005515
Vium1339g00042 716 SMART arm_5 589 630 IPR000225 GO:0005515
Vium1339g00042 716 CDD RING-Ubox_PUB 292 344 IPR045210 -
Vium1339g00042 716 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Vium1339g00042 716 SUPERFAMILY RING/U-box 280 364 - -
Vium1339g00042 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Vium1339g00042 716 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Vium1339g00042 716 FunFam RING-type E3 ubiquitin transferase 367 688 - -
Vium1339g00042 716 Coils Coil 215 235 - -
Vium1339g00042 716 Gene3D - 27 147 IPR036537 GO:0007166
Vium1339g00042 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Vium1339g00042 716 PANTHER U BOX DOMAIN-CONTAINING 56 675 - -
Vium1339g00042 716 FunFam RING-type E3 ubiquitin transferase 290 365 - -
Vium1339g00042 716 SUPERFAMILY ARM repeat 396 672 IPR016024 -
Vium1339g00042 716 Gene3D - 394 670 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00042 Vium-Chr1339 304862 307752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00042 1 715 U-box Gene Family AT1G29340 69.726 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00042 - - gmx:100811153 1233.01