Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00035 ATGACTAGGGCTGTTCGTAGTAGGGTGCTTAAAGATGCCAATGGTGATATTAGTGATCATCTTCGCAACCACATCCATTTGACAAATTGCATTCATCTGAAGAACCATATGCACAAAAACAGCCCCATTCTGGCTGATAGGTCAATCATGAGAGACCTTGTTGTGCTGCAGAGATCGCGGTCTCTTCGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCGCCTTCTGTGGTTGACATGCTTTTCAAAAGAGTTGAAAATGATGCGGTGTCTCAAGGGGGGAGAAGGTCTGTAGGTGTTGAGAGAAGGAAGGAAGGGAGAAGATTATCTGGAACTTCACCACCCTTGGTGAGTATAGCTTCATCAAGAGTTGCCCCAGGTGAGATTGGTAGGGGTACTGATGGGATAACGGCACCTAGTGAACGTAGCAGCAGGAGTGGAGTGGGAGATGGCAGGAGGGTTGGGAGAGAGGAATCTGGTAGGAGGAATGAAAAGCCTGACTTTTTGGATGTTAATCAAGAGGACCCTCTCAATCAAGCTGGGAAAAGTTTGGCTGAAGATGTTATTTCCAGGCATTCCGAGTCTAAAGATAGAAAGAGCAAACAGAGGGGGAAGAATGTTCGAGATTCTCAAGTGAAGACCCTTTCTGAGCAGCTGAATGATGTTCCTTTGGATAGTGATGATCTAGCATCAACAAATATTCATTTTCGTGGAAGGTTTCCTAGACAGGAGAAAATTATCGAGGAGGCAGATTCCCGGGTGCGCAGTAGTGGCAGTGGAATGAATAGGGGGAAAAGGCGTAAGTTTCGAAGTGCTCGAAGAACTCGTGTTGCCACAACATCAAGAGAAATTGGAGGTGAGAATGAACTTTCTGTGGCTTCCAACTCAATAGCTCAGGCTTCAGCCCACCAGAAATATCACTTGGAGGGGGCTGATGAGTTTGGAGATGATAATGTTACTAGGGCTCCGAAAAATGGGTGTGGCATTCCATGGAATTGGTCCAGAATTCATCACAGGGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTGTCTTGTGGTTTATCAGACACTAGGTTGAAGAAAGGGACATTTGCTGACAATGGAAGACATATTTCTGAGATGCCTGTGGCATCTGAGCATTCGAGTTCATATACTAAGTCTGATGCAGAGGCACTGCCCTTGCTAGTTGAGGCTTCTGTGTCTCACGCAAGCACTGAAAATGCTTGTTGGGATCAAGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAACTTATTCAAGCGTGATGTTGATTCTGATCTCGCATCCGAAGCTAGATCTGGTGATCAGCGTAAGTTGAGAGGGAATCGCCACAGTCGACACCAAAGTTTAACACAAAAGTACATGCCTCGAACCTTTAGAGATATGGTTGGGCAAAATTTAGTGGCACAAGCTCTTTCTAATGCAGTAATGAAGAGAAAAGTTGGATTGTTGTACGTGTTCTATGGTCCCCATGGCACTGGAAAAACGTCTTCTGCTCGCATATTTGCAAGAGCTCTGAATTGTAATTCTTCAGAACACCCAAAACCTTGTGGATTTTGCAATTATTGCATAGCGCATGATATGGGCAAGAGTAGAAATATAAAGGAAGTAGGTCCAGTTAGCAATTTTGACTTTGAGAGCATCATGGACCTACTGGACAATATGATTGTTTCTCAGCTTCCATCACATTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCGACGGATTGTTGGAATGCTATATCGAAGGTCATTGACCGAGCACCTAGACGTGTCGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCGGATATTATACATACTCTGCAGAGGATTGCATCCAAAGAAGGTCTAGAAATTGAGAAGGATGCCCTGAAACTGATTGCATCAAGGTCGGATGGATCTATGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTACTTGGACAGAGAATATCCGTTCCTCTTGTTCAGGAATTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCGGCAGACACAGTTAACACCGTGAAGAATTTAAGAGTGATAATGGAAACCGGTGTGGAGCCATTGGCTTTGATGTCACAGCTTGCTACAGTAATTACAGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGTAGACAACCATTGTCCAAAGAAGATATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAACTGAGGATGTCCAATGACAAGCTAACATGGCTGACAGCCGCTTTACTTCAGCTTGCTCCGGACCAGCAATATGTGTTACCAACATCATCTGATAATAGTTTCAACCATAGTCCGTTCACTCTAAAAGATGCAGATGCGAGAGAAGCTGCTAGACTGAATGGTAATCCTGTTGACATTCCTAACAAAACTAGACGATTATCAATGGATGCTAGAATTGAAAATTTCCATGCTGGAAGCTCAGCAGATGGTCTGACAAGGGGTCTTGGTTCTGAGAAGAAGCGACATAGTGTGTCTGGTTTTACTCCTCAACATACACATTTCCAAGCCACTGATAAGATTAAGATGAACGAGAGGCAAATTTTGGGTAAAGGCCGGAAAGAAATTGGAGAGATATGGTTAGAGGTGCTTGAGAGAATACAAGTTACTGGTCTGAAAGAGTTTCTGTTTAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCATTTGACCAAATCTACTGCCGAGAAGTTCACAGGCCAAATCTTACAAGCATTTGAATCTGTCCTTGGATCTTCTATAACAATAGAAATTAGATGTGAGTCAGGCAAAGATGCTGGATCTGCTGTTCAACAGCCTCCTACATTGCCTGCTACTAATGATATTCTGTCTCAGATAAGAGACTTTAACGGTGTTGGTTCTCAAGCTCATCCAACATTAACTGATTCTGTTGAAAAAAGAAGGGGTGAAATTGTAGAAGAAGCATCTTCTGAAGTGGAGCACAAGACTAATGAGCAGCAGGTAAATGGTCATGGAACGTCTTATAGAAAATTAGAAGGTACAAGTATAGGACACACGTCAGTTTCCCAAAACAAGCCAATTGTTAAGTCGCAGTTAGACCAAAGAAAGCTTACGGAGCAAAATCAAAGTCGAAGTCTTGTAAGAAGCAAAGTATCTCTTGCTCATGTAATCCAGCAAGCAGAAGGCCAGAGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCTATTGCTGAGAAGCTTGAACAAGAGAATTTGAGACTGGAGCCAAGATCAAGAAGCTTGCTATGCTGGAAAGCATCAAGAGCAACTCGGCGAAAGCTGTCACGGTTGAAAATTCGTAGTCGAAAACCACGTGCATTGCTGAATCTGGTCTCGTGTGGGAAATGTCTGTCTACAAAATCTCCGAGGTAG 3576 0.4318 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDMLFKRVENDAVSQGGRRSVGVERRKEGRRLSGTSPPLVSIASSRVAPGEIGRGTDGITAPSERSSRSGVGDGRRVGREESGRRNEKPDFLDVNQEDPLNQAGKSLAEDVISRHSESKDRKSKQRGKNVRDSQVKTLSEQLNDVPLDSDDLASTNIHFRGRFPRQEKIIEEADSRVRSSGSGMNRGKRRKFRSARRTRVATTSREIGGENELSVASNSIAQASAHQKYHLEGADEFGDDNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDTRLKKGTFADNGRHISEMPVASEHSSSYTKSDAEALPLLVEASVSHASTENACWDQDYSGELGLFGDNLFKRDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSSARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIKEVGPVSNFDFESIMDLLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIHTLQRIASKEGLEIEKDALKLIASRSDGSMRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFTLKDADAREAARLNGNPVDIPNKTRRLSMDARIENFHAGSSADGLTRGLGSEKKRHSVSGFTPQHTHFQATDKIKMNERQILGKGRKEIGEIWLEVLERIQVTGLKEFLFKEGKLISVSFGAAPTVQLMFSSHLTKSTAEKFTGQILQAFESVLGSSITIEIRCESGKDAGSAVQQPPTLPATNDILSQIRDFNGVGSQAHPTLTDSVEKRRGEIVEEASSEVEHKTNEQQVNGHGTSYRKLEGTSIGHTSVSQNKPIVKSQLDQRKLTEQNQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRSRKPRALLNLVSCGKCLSTKSPR 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00035 1191 NCBIfam DNA polymerase III subunit gamma/tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vium1339g00035 1191 FunFam DNA polymerase III subunit gamma/tau 631 693 - -
Vium1339g00035 1191 MobiDBLite consensus disorder prediction 89 226 - -
Vium1339g00035 1191 MobiDBLite consensus disorder prediction 437 457 - -
Vium1339g00035 1191 FunFam DNA polymerase III subunit gamma/tau 452 629 - -
Vium1339g00035 1191 Pfam DNA polymerase III subunits gamma and tau domain III 686 804 IPR022754 GO:0003887
Vium1339g00035 1191 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Vium1339g00035 1191 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Vium1339g00035 1191 MobiDBLite consensus disorder prediction 211 226 - -
Vium1339g00035 1191 SMART AAA_5 489 630 IPR003593 GO:0016887
Vium1339g00035 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Vium1339g00035 1191 Pfam DNA polymerase III, delta subunit 473 630 - -
Vium1339g00035 1191 MobiDBLite consensus disorder prediction 251 274 - -
Vium1339g00035 1191 Coils Coil 766 793 - -
Vium1339g00035 1191 MobiDBLite consensus disorder prediction 146 171 - -
Vium1339g00035 1191 Gene3D - 631 693 - -
Vium1339g00035 1191 Gene3D - 448 627 IPR027417 -
Vium1339g00035 1191 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 459 889 - -
Vium1339g00035 1191 MobiDBLite consensus disorder prediction 260 274 - -
Vium1339g00035 1191 MobiDBLite consensus disorder prediction 187 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00035 Vium-Chr1339 221969 228252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00035 456 754 Core DNA Replication Machinery Family AT1G21690 23.355 8.41e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00035 - - pvu:PHAVU_006G172900g 2159.41