Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00031 ATGGGAGCAGTGAATGATGCAAACCGCAGCAGAAAGAAGTCATCATCAAGAGGGCACCACAGGTTTGTGGGGGTTCGACAAAGGCCATCGGGGAGATGGGTGGCAGAGATCAAAGACTCTCTACAGAAGGTCAGGCTTTGGCTTGGAACATTTGACACAGCTGAGGATGCAGCTAGGGCATATGACAATGCTGCTCGAGCCTTGAGAGGTGCCAATGCTAGAACCAACTTTGAATTGCCTGAAGCAACTTCTGGTGATGCTTCTAAGCGTGGTGATGGCAGTAGTTCAACCTTTGTGCCCAATTGCTCTGAACCCTTTTCTTTTGAGGATGTCAACGAGCCAAGTGAAGAAGCTGAAGGCCTTCTTGGTGCACTTAAGGCCAAGCTGCTTGATGGAAAGAAAGGAAAGTTTCACTTTCCATTTCTTCCTAATAGTGCTGCTTCCCCGCTTGTTCAATCTGGCTGGGTTTCAACATCAACTCAGAATGTTTGTTCCGCGGAGAAAGATTTATTGTTACCATCATCAGCCAGTAATACTGTCCTCTCAAGTATGAATGGAACTGGAGCCAACCCTTTACTTGGTGTTACGAGTACGTTAGAAACATCAAACACTTGTTCAAAGAGTGTGGTTATCCCAAATCATGATCACGAAGGTTCTGAAGGAAGAAGTTCTAGAGTCGACTCTCATCAACTTTGTCAAACTCCACCGGAGGCAACATGGTTCAATGAAGTGGCATATGAATTGCCTTGGCCTACACAATGTATGAGCCAAGTTCCTGATAATAATAATAGCCTTCTTGCATCTGCAGCCACCTTGGCATGGCCACTTTCTGGGGTGATTGAGTCCATTGATATGGCTTGCCCAGATCAAGGGCCATCAAATTGCAACAAAAGTGGCCAAATGATGAATATGGTGAGCATGCAGTTACCTCTAGTTGGTGGTGCAACTGAAGGGCTTTGGACATTGGAACAACAACAATTTGTGCAATATGAGAACAACAGTTGGTTTAGTTATAATGGCTCTTGGGATCCTCTCCTTTCTGAGCTAGCTTGA 1053 0.4549 MGAVNDANRSRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPEATSGDASKRGDGSSSTFVPNCSEPFSFEDVNEPSEEAEGLLGALKAKLLDGKKGKFHFPFLPNSAASPLVQSGWVSTSTQNVCSAEKDLLLPSSASNTVLSSMNGTGANPLLGVTSTLETSNTCSKSVVIPNHDHEGSEGRSSRVDSHQLCQTPPEATWFNEVAYELPWPTQCMSQVPDNNNSLLASAATLAWPLSGVIESIDMACPDQGPSNCNKSGQMMNMVSMQLPLVGGATEGLWTLEQQQFVQYENNSWFSYNGSWDPLLSELA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00031 350 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Vium1339g00031 350 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Vium1339g00031 350 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vium1339g00031 350 SUPERFAMILY DNA-binding domain 22 78 IPR016177 GO:0003677
Vium1339g00031 350 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Vium1339g00031 350 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 159 - -
Vium1339g00031 350 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Vium1339g00031 350 MobiDBLite consensus disorder prediction 1 25 - -
Vium1339g00031 350 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vium1339g00031 350 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Vium1339g00031 350 MobiDBLite consensus disorder prediction 209 229 - -
Vium1339g00031 350 FunFam ethylene-responsive transcription factor RAP2-11 20 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00031 Vium-Chr1339 171492 172544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00031 9 77 AP2-EREBP Transcription Factor Family AT5G19790 67.143 1.19e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium1339g00031 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00031 - - gmx:102661478 481.1