Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00030 ATGAAGAGTGGTTGTGATGAATGGAAGCCTTTTATAGTAATGATAGCAATTGATTTTTCTTTTGCTGTAGTGAATATTCTTCTCAAGAAAGTCCTTGAAGAGGGGGTGAACCATTTGGTTTTTATCACATACCGGTTGACAATTGCTACCATTTTCATAGCCCCTGTCGCCTACTTTAAAGAAAGAAACGACAGACCAAGGCTCACATTTCGAATTCTATGTTACCTCTTCTGCAGTGCCATTGTTGGGGCATCAGTCACTCAATACTTTGTCCTTGTGGGGATACAATATACTTCTGCTACCTTCGCTTGTGCTTTCATCAACATGGTGCCAGTGGTCACATTCATGATGGCATTACCTTTTGGATTAGAGACTGTGAAAATCAAATGCAACAGTGGGAGAGCTAAGATTCTCGGTTCATTGGTGTGCATAGGTGGCGCATTGATGTTGACACTTTACAAAGGAAAGCCACTGGTTAGTTTTTCTCACAATGAATCCGCAGCTTCTATGGTCAAGAGTTCTGCAGTGAATATATATTCTACAAAGACAACGGAGAAATGGACTATTGGTGTAATAGCCATGGTTATAGGAACCATCTTTTGGTCTTCTTGGTATATTTTACAGTCAAAAATAAGCAAGAGATATCCATGCCAGTATTCTAGCACAGCCATCATGAGCTTCTTTGGAGCCCTTCAATCAGCTGTTATTTGCTTGTGCACTGACCACAACTTGTCCATTTGGGTTCTCAAGGGAAAGATACAAATCATTGCTTTTCTATATTCTGGGATAATAGGATCAGGTTTGTGTTTTGTGGGAATGTCATGGTGTGTGAAGAAGAGGGGTCCTGTCTTTACTGCAGCATTCAGTCCTCTTGTTCAGATAATAGCAGCAATGATTGATATACCTGTCTTGCATGAACAGCTCCATCTTGGAAGTGTGATGGGATCCATCTTGGTGATTGTTGGATTATACATTCTTCTGTGGGGTAAGACCATGGAGATGAAGAATCGTGTGACAAAGTTAGTCCAAGAAGCTGAAGAAACCAAGGAACAAGAGCCGCAGCCGCAAATACAACAGTTGACAGTGTATGTTCACACAGAATCGTGTGATTCGTAG 1116 0.4113 MKSGCDEWKPFIVMIAIDFSFAVVNILLKKVLEEGVNHLVFITYRLTIATIFIAPVAYFKERNDRPRLTFRILCYLFCSAIVGASVTQYFVLVGIQYTSATFACAFINMVPVVTFMMALPFGLETVKIKCNSGRAKILGSLVCIGGALMLTLYKGKPLVSFSHNESAASMVKSSAVNIYSTKTTEKWTIGVIAMVIGTIFWSSWYILQSKISKRYPCQYSSTAIMSFFGALQSAVICLCTDHNLSIWVLKGKIQIIAFLYSGIIGSGLCFVGMSWCVKKRGPVFTAAFSPLVQIIAAMIDIPVLHEQLHLGSVMGSILVIVGLYILLWGKTMEMKNRVTKLVQEAEETKEQEPQPQIQQLTVYVHTESCDS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00030 371 PANTHER WAT1-RELATED PROTEIN 9 343 IPR030184 GO:0016020|GO:0022857
Vium1339g00030 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 331 - -
Vium1339g00030 371 Coils Coil 331 351 - -
Vium1339g00030 371 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020
Vium1339g00030 371 Pfam EamA-like transporter family 11 150 IPR000620 GO:0016020
Vium1339g00030 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00030 Vium-Chr1339 163636 166229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00030 8 261 Nodulin-like Gene Family AT3G30340 50.394 1.21e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00030 - - gmx:100803670 672.159