Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00017 ATGGATCAAAACAGAAGCGAAGAAAGAGGTGAGATACTGGGTCCGGTTCATGAAGGGGTAGATGGGAATTTGAGTCATTTGGTTGAAGGGGTAGTTATTGATGCAGTAGACGGGAACAACTTGGGTGGCAGAGTTGGTACAAGAGGAGAAGCTGGAACTTCAAGAGAGGTGCGTAAGGATTTGGGATCTGAAAAGGAGCTAAAGGAGGAGCTTGAGGAAGTTAAGGATCAGGACAAGCATGGTCAAGAAAATATCAGTGATAATAAATTGCCTGGGGTTGATCAGGGAACTAGTTATAAACCAAACCATTTGGTTAATCAGGAAGTGATTGAAACTGTGGTTGTGATCGAGTCTTTTGAGACTGACTATGTCAATGAGAATAATAGAAAGTTGGAAGCAGAAGTTAATGAATCGGGGTTGAACTTTACATCCATGAAAGTACCGGAAGGGGCGTCTGAAACTGATAAAAGTTCATGTGTGATTGATATAAAATGCAGCAGCCGCAAAAGGTTTTCTGAGAATTCTGAAGGTGAACAGATTTGTAGGATTTGCCATCTGGCTTCTGTGCAGCCATCAGATGAAAATGAAGCAACTGTTGGCCCTGCTGCTAGTAGTGCTACGTGTTCAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACATGTTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTAGTGAGACTGCAACAAATGTTTCGGGTGTTAGTAATTATGAATTTATGGAAAAGTGGAATGAAAGAAGGTTCATGGAAGACGGTGGCAACTCATCCCGCAGGTTTGGTGGATGCTGGCGAGGACAACCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCATGGTTTTTTCGTGTAAATGTGTTCTAG 939 0.4249 MDQNRSEERGEILGPVHEGVDGNLSHLVEGVVIDAVDGNNLGGRVGTRGEAGTSREVRKDLGSEKELKEELEEVKDQDKHGQENISDNKLPGVDQGTSYKPNHLVNQEVIETVVVIESFETDYVNENNRKLEAEVNESGLNFTSMKVPEGASETDKSSCVIDIKCSSRKRFSENSEGEQICRICHLASVQPSDENEATVGPAASSATCSDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICSETATNVSGVSNYEFMEKWNERRFMEDGGNSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNVF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00017 312 MobiDBLite consensus disorder prediction 1 21 - -
Vium1339g00017 312 MobiDBLite consensus disorder prediction 1 15 - -
Vium1339g00017 312 ProSiteProfiles Zinc finger RING-CH-type profile. 173 252 IPR011016 GO:0008270
Vium1339g00017 312 SMART ringv_2 180 246 IPR011016 GO:0008270
Vium1339g00017 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 257 IPR013083 -
Vium1339g00017 312 MobiDBLite consensus disorder prediction 51 85 - -
Vium1339g00017 312 SUPERFAMILY RING/U-box 176 248 - -
Vium1339g00017 312 MobiDBLite consensus disorder prediction 38 100 - -
Vium1339g00017 312 PANTHER ZINC FINGER, RING-CH-TYPE 47 312 - -
Vium1339g00017 312 Coils Coil 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00017 Vium-Chr1339 93934 97128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00017 161 311 C3H Transcription Factor Family AT5G05830 37.736 9.38e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00017 - - vra:106775190 585.874