Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00015 ATGGAAGATGTCAAAGTGCTTGCTTGTCTAGCTTCCCTCTTTCTGTGTTATTGGGTGCTTCTTGTAGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCATGAAGAGTAAGATGTATGACGAGTTTCATGTTATGCATGATTGGGATATTAATTCAGTTGACCCCTGCACTTGGTACATGGTTGGTTGCTCCGCCGAGGGTTATGTCATTTCCCTGGAAATGGCCAGTGCGGGTTTATCCGGGACGATTTCCTCAGGAATTGGAAATTTGAGCCACCTTCATACATTGTTATTGCAGAACAATAAGTTATCAGGTCCTATTCCGACTGAGATAGGAAAGCTTTTAGAGCTTCAAACCCTTGACCTTTCTGGTAACCAGCTAGATGGAGAAATTCCTAATTCATTGGGCTTTTTGACTCAACTTAGTTACCTGCGGCTCAACAAAAATAAACTATCTGGACAGATCCCTCATCTTGTTGCTAATCTCACAGACCTTTCATTCTTGGACTTGTCATTCCATAATCTTAGTGGTTCCACTCCAAAAATTTTAGTGAAAGGTTATAGTATTTCAGGGAACAACTTCCTCTGCACCTCTTCTTCTCAAATTTGTATGGGCTTCTCAAAACCAGTTAATGATACAGGATCATCTCAGTCGACTGGTGGTCATCACCAAAGGGTGCTTGCTGTTGTTATTGGCTTCAGTTGCACATTTGTAATTTCAGTGGTGCTTCTTGTATTTTGGTTGCATTGGTACAGATCAAACATTCTGTACACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATCTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAGTTTCAATTCAAAAAACATCCTAGGGCAAGGCGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCGAATAAAATGTTAGTGGCAGTAAAGAGGTTGAAAGATCCCAACTATACTGGAGAAGTACAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCAGTGCATCGAAACCTCTTGCGCCTTTATGGATTCTGTATGACACCGGATGAAAGGTTACTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAGCCATCATTGGACTGGAACAGGCGAATGCGCGTTGCTCTTGGGACAGCACGCGGGCTTCTGTACTTGCATGAACAATGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTATTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCGGGAAATGCTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATATGAGGAGAAACGGGTGGAAGTGTTAGTGGATAGGGATCTGAGGGGATGTTTTGATCCTGTAGAGTTGGAGAAAGCAGTGGATTTGTCTCTACAGTGTACTCAGTCACTTCCCACTTTGCGGCCAAAGATGTCAGAAGTTCTGAAGATTCTAGAAGGTCTGGTGGGACAGTCAATGCGGGCAGAGGAGTCACAAGGGGTGACTAACCTGTACGGTGAAAGGACTTGCAGTTTCTCACAAAATTACAGTGATGTTCACGAAGAACCTTCCTTTATTATCGAAGCCATTGAGCTCTCTGGACCTCGCTGA 1695 0.433 MEDVKVLACLASLFLCYWVLLVEGTDSLLSPKGVNYEVAALMSMKSKMYDEFHVMHDWDINSVDPCTWYMVGCSAEGYVISLEMASAGLSGTISSGIGNLSHLHTLLLQNNKLSGPIPTEIGKLLELQTLDLSGNQLDGEIPNSLGFLTQLSYLRLNKNKLSGQIPHLVANLTDLSFLDLSFHNLSGSTPKILVKGYSISGNNFLCTSSSQICMGFSKPVNDTGSSQSTGGHHQRVLAVVIGFSCTFVISVVLLVFWLHWYRSNILYTSYVEQDCEFDIGHLKRFSFRELQIATGSFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGTARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAGNAQVQKGMILDWVRTLYEEKRVEVLVDRDLRGCFDPVELEKAVDLSLQCTQSLPTLRPKMSEVLKILEGLVGQSMRAEESQGVTNLYGERTCSFSQNYSDVHEEPSFIIEAIELSGPR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00015 564 SMART serkin_6 297 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00015 564 FunFam Putative LRR receptor-like serine/threonine-protein kinase 34 215 - -
Vium1339g00015 564 SUPERFAMILY Protein kinase-like (PK-like) 280 514 IPR011009 -
Vium1339g00015 564 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 512 - -
Vium1339g00015 564 SUPERFAMILY L domain-like 36 206 - -
Vium1339g00015 564 Gene3D Transferase(Phosphotransferase) domain 1 452 534 - -
Vium1339g00015 564 ProSiteProfiles Leucine-rich repeat profile. 126 149 IPR001611 GO:0005515
Vium1339g00015 564 FunFam Os07g0541700 protein 373 455 - -
Vium1339g00015 564 Pfam Protein kinase domain 298 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00015 564 Gene3D Phosphorylase Kinase; domain 1 267 372 - -
Vium1339g00015 564 ProSiteProfiles Protein kinase domain profile. 297 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00015 564 FunFam Somatic embryogenesis receptor kinase 1 267 372 - -
Vium1339g00015 564 Gene3D Transferase(Phosphotransferase) domain 1 373 451 - -
Vium1339g00015 564 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Vium1339g00015 564 Gene3D Ribonuclease Inhibitor 34 214 IPR032675 -
Vium1339g00015 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Vium1339g00015 564 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00015 Vium-Chr1339 83144 87933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00015 42 564 Receptor kinase-like Gene Family AT5G45780 61.102 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium1339g00015 Pkinase 3.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00015 - - ccaj:109812711 947.962