Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00012 ATGAAGCAGTTTTCCACGTTCTTCATTCTCCTTTCACTGGTTGCGCTCGTGGACTCTAAATATTATTCATGCAAAAATGAAGACCAGGAGCTTGTGTCAAAGGCGTTTCAATCTGTGTCTGGATTCAACTCTTCCTGGTTCCAAAGCCCTTCTAATTGTTCAAATGCTGATTTTATTAAAGGACTAAATCTTTCGTTCAGGAACCTAAGGGGAAGCATTTCGTGGAAGTATCTGAGGAACATGTCCAAGTTGGAGGTTCTAGATCTGTCTGGGAATTTCTTACAAGGGCAGGTACCAAACTGGTTGTGGACAAGCTCATCCTTATTGGTAGTGAACCTTTCCCAGAACAGCTTCGGAGGGAGCATTAACCCCACTTACCAAAACGGTTCCTTTTCATCGCTGAAAAATCTCAATCTCTCGTACAACAGGTTCACCAACCAGCTTCACCTCTCTGTTTTCTCAAACCTTAAAAGCCTCGACCTTTCACACAATAACCTCAGAACTTTACCTTTGGGGTTCCAAAACCTCACCAATCTACACCACCTTAATCTCTCCAACTGCAACATCAAAGGCAGCGTAAAACCCATTTCCACCTTAACCTCACTATCCTTCTTGGACCTTTCGAACAACTCTTTGAACGGTAGCTTCCCCTCGGATTTCCCTCCCTTGAAGACCATAAAATTCTTGAATATCTCTCACAACAACTTCAAAACATCCACCGCATTAGACAGATTCAAAAAGTTCGGCAAATCGGCGTTCATTCACGCTGGTAACAACTTCAGCTACACCACATCCAAAACCCCAAAGCTAGGTGCAACCTCGACATCAGCTTCAACTTCAACCCCACCACACCAACAGTCCCACCACATCCAGGCGGAGAAGAAGAGGCCAAGAGAAAAGCAAAAGTCAAAACAGAAACCAAGAAGCATGATTGCGGCCCTGTCGTGTGCCTCGGCACTCGTGGTTGTCGGATTGTGCATGTGCGTTGTGTGGCGTTGCAGAAGGAAGAGGCAACTGGCAAAAAGGAACAAGTGGGCGATCTCTAAACCGGTCCCAGTGAACGTGAAAGTGGAGAAATCGGGACCCTTCGCATTCGAGACAGAATCAGGGACATCCTGGGTGGCTGACCTGAAGGAACCCTCTTCCGCACCCGTGGTCATGTTCGAAAAGCCTCTCATGAACCTCACCTTCGTGGACCTCATCGCTGCCACGTCACACTTTGGCAAAGACTCTCTCCTGGCTGAGGGCAGGTGTGGGCCCGTGTACCGCGCTGTCTTAACCGGAGACATCCACGTGGCAATCAAAGTCATCGAAAACGCCAGAGACGTCCATCATGATGACGCTGTCGCTCTCTTCGTTGACCTTTCCCAACTCAAACACCCCAATCTTTTGCCCCTCTCCGGTTACTGTATTGCAGGGAAGGAGAAGCTCGTGCTGTACGAGTTTATGTCCAACGGAGATTTGGGTAGGTGGTTGCAGGAACTACCGGCAGGGGAGACTAACGTCGAGGATTGGAGCGGTGACACATGGGAGATTATTCAAAACGGCGCCGTTTCTCGAGCCTCGCCGCCGGAAAAGATGGGCTGGCCAATACGCCACCGTATTGCGGTGGGCGTGGCGCGTGGGTTGGCGTTTCTGCACCACGCGGGGTCAAGGCCCGTTGTGCACGGCCATCTCGTGACCTCCAATGTCCTTCTCGGCGACGACTTCGAGCCGCGAATCGCGGATTTCGGGTTCCGGAAGTTTGGAAGGGAGGGTGCTGCCGCCGCGACGAACTGCTCGACGGAGACGGATGTTTACTGCTTTGGTGTGGTGCTTATGGAGCTTCTGACGGGGAGGGGCGGCACTGCGGAGACGGTGGTTTGGGTGAGGAAGGCGGTAAGGGAGGGACACGCTGTGAAGGCGCTGGATGAGAGGCTTAAACTCGGCAGCGGCGGCGACTCGGAGAGTGAGATGGTGGAGAGCCTCCGAGTAGCGTATTTGTGTACGGCCGAGTCACCCGGGAAGAGGCCCAGCATGCAGCAGGTATTGGGCCTGCTGAAAGATATTCACCCGAGTCACGGACTGGACTGA 2073 0.5176 MKQFSTFFILLSLVALVDSKYYSCKNEDQELVSKAFQSVSGFNSSWFQSPSNCSNADFIKGLNLSFRNLRGSISWKYLRNMSKLEVLDLSGNFLQGQVPNWLWTSSSLLVVNLSQNSFGGSINPTYQNGSFSSLKNLNLSYNRFTNQLHLSVFSNLKSLDLSHNNLRTLPLGFQNLTNLHHLNLSNCNIKGSVKPISTLTSLSFLDLSNNSLNGSFPSDFPPLKTIKFLNISHNNFKTSTALDRFKKFGKSAFIHAGNNFSYTTSKTPKLGATSTSASTSTPPHQQSHHIQAEKKRPREKQKSKQKPRSMIAALSCASALVVVGLCMCVVWRCRRKRQLAKRNKWAISKPVPVNVKVEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLIAATSHFGKDSLLAEGRCGPVYRAVLTGDIHVAIKVIENARDVHHDDAVALFVDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLQELPAGETNVEDWSGDTWEIIQNGAVSRASPPEKMGWPIRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLLGDDFEPRIADFGFRKFGREGAAAATNCSTETDVYCFGVVLMELLTGRGGTAETVVWVRKAVREGHAVKALDERLKLGSGGDSESEMVESLRVAYLCTAESPGKRPSMQQVLGLLKDIHPSHGLD 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00012 690 Pfam Leucine rich repeat 133 189 IPR001611 GO:0005515
Vium1339g00012 690 PRINTS Leucine-rich repeat signature 156 169 - -
Vium1339g00012 690 PRINTS Leucine-rich repeat signature 199 212 - -
Vium1339g00012 690 FunFam Putative LRR receptor-like serine/threonine-protein kinase 368 482 - -
Vium1339g00012 690 Gene3D Phosphorylase Kinase; domain 1 367 482 - -
Vium1339g00012 690 ProSiteProfiles Leucine-rich repeat profile. 155 177 IPR001611 GO:0005515
Vium1339g00012 690 MobiDBLite consensus disorder prediction 265 287 - -
Vium1339g00012 690 MobiDBLite consensus disorder prediction 265 307 - -
Vium1339g00012 690 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 49 683 - -
Vium1339g00012 690 Gene3D Ribonuclease Inhibitor 31 127 IPR032675 -
Vium1339g00012 690 Gene3D Ribonuclease Inhibitor 128 318 IPR032675 -
Vium1339g00012 690 Gene3D Transferase(Phosphotransferase) domain 1 512 688 - -
Vium1339g00012 690 ProSiteProfiles Protein kinase domain profile. 407 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00012 690 SUPERFAMILY Protein kinase-like (PK-like) 384 681 IPR011009 -
Vium1339g00012 690 SMART LRR_typ_2 81 105 IPR003591 -
Vium1339g00012 690 SMART LRR_typ_2 153 175 IPR003591 -
Vium1339g00012 690 SMART LRR_typ_2 199 222 IPR003591 -
Vium1339g00012 690 SUPERFAMILY L domain-like 43 239 - -
Vium1339g00012 690 Pfam Protein tyrosine and serine/threonine kinase 411 581 IPR001245 GO:0004672|GO:0006468
Vium1339g00012 690 Pfam Leucine Rich Repeat 83 101 IPR001611 GO:0005515
Vium1339g00012 690 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Vium1339g00012 690 FunFam Calmodulin-binding receptor kinase CaMRLK 132 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00012 Vium-Chr1339 65662 69031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00012 62 683 Receptor kinase-like Gene Family AT5G07280 29.713 6.96e-68 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vium1339g00012 PK_Tyr_Ser-Thr 9.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00012 - - gmx:100778920 1150.58