Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00011 ATGGCCGCCGCCACCCCCACGAGCCATCACAAGAGGGAGCCATCGAACCTTCTATTGGGTCGTTTCGAGATTGGGAAACTCCTTGGACATGGAACCTTCGCAAAGGTCTACTACGCGCGGAACCTCAAAACCGGCGAAGGCGTGGCCATCAAGGTAATCGACAAGGAGAAGATTCTGAAGGGAGGTTTGGTGGCACATATAAAGCGCGAGATCTCCATCCTCCGCCGCGTGCGCCACCCCAACATTGTCCAACTCTTCGAAGTAATGGCCACCAAGAGCAAGATCTATTTCGTAATGGAATACGTTCGCGGGGGCGAGCTTTTCAACAAGGTCGCGAAAGGAAGGCTCAAAGAAGAGGTTGCCAGGAAGTACTTTCAGCAGTTAATCTCCGCGGTGGGGTTCTGCCACGCCAGAGGGGTGTACCATAGAGATCTCAAACCTGAAAATCTCTTGCTTGATGAGAATGGTAATCTTAAGGTCTCGGATTTCGGGTTGAGTGCGGTTTCTGATCAAATCCGACAGGATGGGTTGTTCCATACTTTTTGTGGGACACCTGCGTATGTTGCTCCCGAAGTCTTGGCGAGGAAAGGATACGATGGTGCCAAGGTGGATCTCTGGTCTTGTGGGGTCGTGTTGTTTGTGTTGATGGCGGGGTATTTACCCTTCCACGACCAGAATGTTATGGCAATGTATAAGAAGATTTACAGAGGGGAGTTTCGGTGTCCCAGGTGGTTTTCTCCTGATTTGTCCAGGCTTCTCACGAGGCTTCTTGACACCAAGCCCGAAACCCGGATTGCGATTCCCGATATTATGGAGAACAAGTGGTTCAAGAAAGGGTTCAAGCAGATCAAGTTTTATGTTGAGGATGACAGGCTTTGCAATGTGGATGATGACGTGCTTTTGGACAATGATGACGATGTTGCTTCTGTTGCTTCTTTTTCGGATTACTCGATTTCGGAGTCTGATTCCGAGGTTGAAGTTAGGAGAAAGAATGCTCCTTTGCCTAGACCACCTAGTTTGAATGCTTTCGACATTATATCGTTTTCCCCTGGGTTTGATCTCTCTGGGTTGTTTGAGGAGAAGGAAGATGAAACCAGGTTCGTGACTGCTGCACCAGTTAACAGGATTATTTCCAAGTTGGAGGAGATTGCTCAGTTGGTGAGGTTTACAGTGAGGAAAAAGGATTGCAGGGTGAGTTTGGAGGGTACCCGAGAGGGGGTGAAAGGGCCTTTGACCATTGCTGCTGAGATTTTTGAGTTGACACCTAGTTTGGTTGTGGTGGAGGTGAAGAAAAAGGGAGGGGATAGAGCTGAATATGAGAGGTTTTGTAACAATGAATTGAAGCCAGGACTGCAGAATTTGATGGTGGAGGAGTCTTCAACTTCTTCAGGATTGTCTACACCTCAACCTTCCTTGCTACGTGGACTTTCTGAATCTGTTTCGGATATTTCTTCTGAAATCGGAAGCCCATGCTATATGCCTTCCGTTTAG 1491 0.4822 MAAATPTSHHKREPSNLLLGRFEIGKLLGHGTFAKVYYARNLKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRIAIPDIMENKWFKKGFKQIKFYVEDDRLCNVDDDVLLDNDDDVASVASFSDYSISESDSEVEVRRKNAPLPRPPSLNAFDIISFSPGFDLSGLFEEKEDETRFVTAAPVNRIISKLEEIAQLVRFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNNELKPGLQNLMVEESSTSSGLSTPQPSLLRGLSESVSDISSEIGSPCYMPSV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00011 496 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vium1339g00011 496 ProSiteProfiles Protein kinase domain profile. 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00011 496 ProSiteProfiles NAF domain profile. 335 359 IPR018451 GO:0007165
Vium1339g00011 496 FunFam Non-specific serine/threonine protein kinase 337 455 - -
Vium1339g00011 496 CDD CIPK_C 341 452 - -
Vium1339g00011 496 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 449 - -
Vium1339g00011 496 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00011 496 Gene3D Transferase(Phosphotransferase) domain 1 13 330 - -
Vium1339g00011 496 FunFam Non-specific serine/threonine protein kinase 13 101 - -
Vium1339g00011 496 FunFam Non-specific serine/threonine protein kinase 12 330 - -
Vium1339g00011 496 SMART serkin_6 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00011 496 Pfam NAF domain 337 393 IPR004041 GO:0007165
Vium1339g00011 496 CDD STKc_SnRK3 21 275 - -
Vium1339g00011 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vium1339g00011 496 Gene3D Kinase associated domain 1, KA1 335 456 - -
Vium1339g00011 496 SUPERFAMILY Protein kinase-like (PK-like) 18 277 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00011 Vium-Chr1339 55878 57908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00011 5 458 CBL-interacting serine-threonine protein kinases AT4G18700 80.220 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium1339g00011 Pkinase 1.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00011 - - gmx:100814720 843.573