Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00010 ATGGAGAAAAAAATTGTGATGCAAAAGTACGAGATTGGACGCTTCCTTGGACAAGGCAATTTCGCCAAAGTTTACCATGCAAGGAACTTGAAGACAGGCCAGAGCGTGGCCGTGAAAGTTATCAATAAAGAGATGATGATGATGAAGGAGGGTATGAAGGATCAAATCAAGCGCGAAATCTCAGTGATGCGCCTTGTGAGGCACCCCAACATCGTGCAGCTGTACGAGGTCATGGCAACCAAGACAAAGATATATTTTGCAATGGAATTGGTGAAAGGTGGCGAACTTTTTCATAAAGTGTCCCGAGGAAGGTTGAAGGAGGATGTAGCAAGAAAATATTTTCAGCAGCTGATTGATGCTGTTGATTACTGCCACAGCTTAGGGGTGTGTCATCGTGATCTCAAGCCAGAGAATCTTCTTCTTGATGAAAATGGGGATCTCAAAATTACGGATTTTGGTTTGAGCGCATTGGTTGAATCCAAAAAGAAGGATGGCCTTCTTCACACAATATGTGGAACTCCAGCCTATGTTGCTCCTGAGGTTATAAAGAATAAAGGATATGATGGAGCCAAGACAGATATATGGTCTTGTGGAGTGATTCTCTATGTTCTTTTGGCAGGTTTTGCTCCTTTCAACGACAGGAATTTGATGGAGATGTATAAGAAGATTATCAAAGCAGATTGCCAATTCCCAAAATGGTTCTCTATAGATGTGAAAAGACTTATTTATAGGATCCTTGATCCCAATCCAACGAGTAGAATTAGTGTTGCTAAGATTGTGCAAAGTCGTTGGTTTAGAAAGGGGTACGTGCAGACTGTAGAATATCAGCTGCCACCTTTGTTCCCCAGAAATGGAGATGATATCTTGGATGTTCAGGTTGTATTTGATTCATCAGATTCAGATGGCAGTCCAATGTCAACAAAAAAAGAAAGCCCCTTGAAGCTATATCAATTCAATGCATTTGATTTGATATCACTCTCATCAGGTCTTGATCTTTCTGGTTTGTTTGAAAATGATCAGAATGAAAGACAACTGACGAGATTTACTACCAGAGAAAGACCTTCTACTGTTGTATCAATGCTTGAAGAGATAGCACAGATAGATGATAAATTTAAAGTCTTGAAGAAAGATGGGATTGTTAGATTGGAGGGATGCAAATCAGGAATAAAAGGCCAACTCATCCTACATGCAGAAATTTTTGAAGTTACATCTTCCTTGCATGTTGTTGAGGTGACAAAAGTAGCTGGAAACACATTGGAATATTCAAAATTCAGGGAACAGTACCTCAAACCTTCTTTGAAAGAAATTATTTAA 1314 0.3957 MEKKIVMQKYEIGRFLGQGNFAKVYHARNLKTGQSVAVKVINKEMMMMKEGMKDQIKREISVMRLVRHPNIVQLYEVMATKTKIYFAMELVKGGELFHKVSRGRLKEDVARKYFQQLIDAVDYCHSLGVCHRDLKPENLLLDENGDLKITDFGLSALVESKKKDGLLHTICGTPAYVAPEVIKNKGYDGAKTDIWSCGVILYVLLAGFAPFNDRNLMEMYKKIIKADCQFPKWFSIDVKRLIYRILDPNPTSRISVAKIVQSRWFRKGYVQTVEYQLPPLFPRNGDDILDVQVVFDSSDSDGSPMSTKKESPLKLYQFNAFDLISLSSGLDLSGLFENDQNERQLTRFTTRERPSTVVSMLEEIAQIDDKFKVLKKDGIVRLEGCKSGIKGQLILHAEIFEVTSSLHVVEVTKVAGNTLEYSKFREQYLKPSLKEII 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00010 437 FunFam Non-specific serine/threonine protein kinase 314 437 - -
Vium1339g00010 437 CDD CIPK_C 319 434 - -
Vium1339g00010 437 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Vium1339g00010 437 SMART serkin_6 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00010 437 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Vium1339g00010 437 Gene3D Kinase associated domain 1, KA1 316 437 - -
Vium1339g00010 437 Pfam NAF domain 318 373 IPR004041 GO:0007165
Vium1339g00010 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 427 - -
Vium1339g00010 437 Pfam Protein kinase domain 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00010 437 FunFam Non-specific serine/threonine protein kinase 1 90 - -
Vium1339g00010 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vium1339g00010 437 FunFam Non-specific serine/threonine protein kinase 3 309 - -
Vium1339g00010 437 SUPERFAMILY Protein kinase-like (PK-like) 6 319 IPR011009 -
Vium1339g00010 437 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
Vium1339g00010 437 ProSiteProfiles Protein kinase domain profile. 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00010 Vium-Chr1339 44024 45914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00010 5 437 CBL-interacting serine-threonine protein kinases AT5G45820 60.138 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium1339g00010 Pkinase 7.1e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00010 K07198 - gmx:100807927 682.174