Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00008 ATGGCCAACCCTGGGGTGGAAAGATTCCCTGACTTCTTCCAGAGGTGGAATGGGAAGCTTGAGGATATTCTCCAACAGCTTATGCAGGTGTCCAACCAGAGAACCGAGGTGGTCAAGACTCAACAAGAGCTGCAAGCTTTGGTGTCAACAGTCACAACCCATTTGAAGTTATACTACACTACCAAATGGGCTGCTGCACATGGAAACGTTCTGATTTTCTTTTCTCCACCCTGGCTGAACCCTTTGGAGCATGCTCAGCTTTGGTTGTCGGGGTGGAAGCCGTCCACGGTGTTCAGGCAGGTGGAGAATCTGAAGAACAGGAATGTTTTGGTGTTGACGGAGGAGCAGAATAAGAAGATAGAGGAGCTGAAGATGAGGGTAAAGATGGAGGAGGAGAAGGTGGAGAGGGAGATGGAGAGGCAGCAGGTGGCCATGGCGGACCGCAAGATGGTGCAGTTGGCCAAAATCACGGGCCGCGCAAGTGCCAATGGTTCGGCGGATGCTGTTGCCGAAGTGGCAGTGAAGGAGGTTTTTGAAGGGTTGGAGACGGTCATGAAGGCTTCCGATTGCGTGAGGCTCAAGACACTCAAAGGGGTGTTGGATTTGCTTAGTCCAATGCAGAGTGTGGACTTCCTGGCGGCGAATATAACTACGCAGCTGCGATTCAGGCACTGGGGGGCGAAGAAGAAGGACACCGCTGGGGCCGTGCCCAGTGTGAATCAAGACAAGTGA 732 0.5287 MANPGVERFPDFFQRWNGKLEDILQQLMQVSNQRTEVVKTQQELQALVSTVTTHLKLYYTTKWAAAHGNVLIFFSPPWLNPLEHAQLWLSGWKPSTVFRQVENLKNRNVLVLTEEQNKKIEELKMRVKMEEEKVEREMERQQVAMADRKMVQLAKITGRASANGSADAVAEVAVKEVFEGLETVMKASDCVRLKTLKGVLDLLSPMQSVDFLAANITTQLRFRHWGAKKKDTAGAVPSVNQDK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00008 243 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 8 234 - -
Vium1339g00008 243 Pfam Seed dormancy control 24 101 IPR025422 GO:0006351|GO:0043565
Vium1339g00008 243 Coils Coil 113 149 - -
Vium1339g00008 243 ProSiteProfiles DOG1 domain profile. 6 232 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00008 Vium-Chr1339 26325 27538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00008 2 223 bZIP Transcription Factor Family AT5G06960 26.009 6.48e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00008 - - pvu:PHAVU_006G175000g 357.451