Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00007 ATGGAACTAAGATGGAACACATTTGGATTTTGTCTAAGAATTTATATTTTCTTGTTCTCACTGTGGGGAATCCGAGATTGTTGGTCCGTTAACGATGAAGGACTGGCTTTGTTAGCGTTTCAAGCGAGAATAACCAGTGATCCCTTTAATGCTTTGGTGAATTGGAATCCCAATGATTGTGACCCTTGCGGGTGGTTGGGTGTTCATTGTGTAGATGGTAAAGTGCAAGTATTGGACTTAAAAGGGTTATCATTGGAAGGGACGTTGGCTCCTGAGCTTGGCAGACTTAATCATCTAAATTCTATTGTATTATGCAAGAATAACTTTTCTGGTGCCATTCCCAAAGAACTTGGAGATTTACCCAAGCTAGAGTTATTAGATTTAAGGGAAAATAATTTGTCAGGAAACATCCCAGCAGAAATTGGCAACATGTCGTTATTAAAACACTTTGTGTGGCAACGTAACTTCAACCAATGGTACAAATCAGATTCATTGATTATTCTAACCAAAGCAAAACTTAAGAAATTCGCCAATGCCTTTGCTTGGCCACTATTCAAACTAGGGAAGACTAGCTCTCATGGCAATGAAAAAGATTATTGTGACATTCTGCCCAGTTCTGATGTGCCAAAGATAGCCCAAAATGTACCAGAAATTGTTAGTTCTACACGTCGTAAGTTACTTCAGTCTAGTGGTAATAACCTTGCAGCTGTACCTTTCGATGACAAAACACCAATAGAGTTTAGCACTGCTCCAACTACCTTCAGTACTGGAGCTATTCCTGCTGTTCCAGATGCCACTGAGAAACAAAATCAGCCTGCATCCTCAGATCCTAATGCTCCTGACGATGCTTCTGATGAAAATCAATCACAAGATGCTTCCGATGGAAATCAAGAAAGTCAACATGTAAATAATGGTGCTTCTATCTGGAAGTGGATAATTATTATTCTTCTTCTGCTGGCTATTATTATCATAATTCTTTTATACATTATGCGAAAACGAGCCGCAAAAGTAATAGGCCCCTGGAAGACAGGAATAAGTGGACAGTTGCGGAAAGCATTTATAACAGGGGTTCCCAAGTTGAATAGAGCAGAATTAGAGACAGCCTGTGAAGATTTTAGCAATATTGTTATTGATTCTTATGCCGAGTGCACCATCTACAAAGGAACATTGTCTAGTGGAGTTGAGATTGCTGTAGTTTCTACTCTAATTACTTCTTCTAAGAATTGGTCAAAGAGCATGGAGATAAGATACCGCAAAAAGATTGATAATTTGTCTCGCATAAATCATAAGAACTTTATTAATCTTATCGGCTACTGCGAAGAAGAAGAACCATTCACTAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAAACTTATTTGAGCATTTACATGTTTCGCATTTGGAACGTATTGATTGGAGTGCAAGGGTAAAGATTATCATGGGGGTTGCGTATTGCCTTCAATACATGCACCATGACTTAAATCCGCCTATGGCACAGAGCAAGCTAGCTTCAAATATGATATTTTTAACAGATGATTTTTCTGCTAAGATTGCAGAGGTTACTTTTAGACATATTGTGTCACCAGAGAGCTTGGGTGATTCAAATAAATCTGATGATGGGCCATCCGACAAGAATATTGAAACCAACGTTTACAAATTTGGAGAGTTATTGCTGGAAATCATCTCAGGGAAATTACCTTACTCGGAAGAACATGGCAACCTAGTGGACTGGGCTGCTAAGTACATAAACGAGAAAACAAACCTCAAAGATTTGGTGGATCCCAGCCTCGAATGTTTCAAGGAGAACGAACTTCATTGCATTTGTGATGTGATCCAAGACTGTATCAAACCTGATGTAAAGTCAAGACCAACAATGAGGGACGTGACTTCCAAATTAAGGGAAGTGCTTGGTTTGTCACCTGAGCAAGTGGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCCTGTCAGTGGAGACGACTTAA 1995 0.396 MELRWNTFGFCLRIYIFLFSLWGIRDCWSVNDEGLALLAFQARITSDPFNALVNWNPNDCDPCGWLGVHCVDGKVQVLDLKGLSLEGTLAPELGRLNHLNSIVLCKNNFSGAIPKELGDLPKLELLDLRENNLSGNIPAEIGNMSLLKHFVWQRNFNQWYKSDSLIILTKAKLKKFANAFAWPLFKLGKTSSHGNEKDYCDILPSSDVPKIAQNVPEIVSSTRRKLLQSSGNNLAAVPFDDKTPIEFSTAPTTFSTGAIPAVPDATEKQNQPASSDPNAPDDASDENQSQDASDGNQESQHVNNGASIWKWIIIILLLLAIIIIILLYIMRKRAAKVIGPWKTGISGQLRKAFITGVPKLNRAELETACEDFSNIVIDSYAECTIYKGTLSSGVEIAVVSTLITSSKNWSKSMEIRYRKKIDNLSRINHKNFINLIGYCEEEEPFTRMLVFEYAPNGNLFEHLHVSHLERIDWSARVKIIMGVAYCLQYMHHDLNPPMAQSKLASNMIFLTDDFSAKIAEVTFRHIVSPESLGDSNKSDDGPSDKNIETNVYKFGELLLEIISGKLPYSEEHGNLVDWAAKYINEKTNLKDLVDPSLECFKENELHCICDVIQDCIKPDVKSRPTMRDVTSKLREVLGLSPEQVVPRLSPLWWAELEILSVETT 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00007 664 Gene3D Ribonuclease Inhibitor 29 199 IPR032675 -
Vium1339g00007 664 ProSiteProfiles Protein kinase domain profile. 332 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00007 664 SUPERFAMILY Protein kinase-like (PK-like) 382 633 IPR011009 -
Vium1339g00007 664 FunFam Inactive receptor-like serine/threonine-protein kinase 344 453 - -
Vium1339g00007 664 Gene3D Transferase(Phosphotransferase) domain 1 454 643 - -
Vium1339g00007 664 Gene3D Phosphorylase Kinase; domain 1 345 453 - -
Vium1339g00007 664 MobiDBLite consensus disorder prediction 266 300 - -
Vium1339g00007 664 Pfam Protein tyrosine and serine/threonine kinase 384 633 IPR001245 GO:0004672|GO:0006468
Vium1339g00007 664 SUPERFAMILY L domain-like 29 158 - -
Vium1339g00007 664 PANTHER PROTEIN MALE DISCOVERER 2 14 662 - -
Vium1339g00007 664 MobiDBLite consensus disorder prediction 267 300 - -
Vium1339g00007 664 FunFam Leucine-rich repeat receptor-like kinase 34 155 - -
Vium1339g00007 664 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00007 Vium-Chr1339 17748 23302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00007 27 638 Receptor kinase-like Gene Family AT2G42290 25.970 2.23e-45 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vium1339g00007 PK_Tyr_Ser-Thr 1.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00007 - - vun:114189247 1170.61