Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00006 ATGGAACTAAGATGGAACACATTTGGATTTTGTCTAAGAATTTATATTTTCTTGTTCTCACTGTGGGGAATCCGAGATTGTTGGTCCGTTAACGATGAAGGACTGGCTTTGTTAGCGTTTCAAGCGAGAATAACCAGTGATCCCTTTAATGCTTTGGTGAATTGGAATCCCAATGATTGTGACCCTTGCGGGTGGTTGGGTGTTCATTGTGTAGATGGTAAAGTGCAAGTATTGGACTTAAAAGGGTTATCATTGGAAGGGACGTTGGCTCCTGAGCTTGGCAGACTTAATCATCTAAATTCTATTGTATTATGCAAGAATAACTTTTCTGGTGCCATTCCCAAAGAACTTGGAGATTTACCCAAGCTAGAGTTATTAGATTTAAGGGAAAATAATTTGTCAGGAAACATCCCAGCAGAAATTGGCAACATGTCGTTATTAAAACACTTATTCAAACTAGGGAAGACTAGCTCTCATGGCAATGAAAAAGATTATTGTGACATTCTGCCCAGTTCTGATGTGCCAAAGATAGCCCAAAATGTACCAGAAATTGTTAGTTCTACACGTCGTAAGTTACTTCAGTCTAGTGGTAATAACCTTGCAGCTGTACCTTTCGATGACAAAACACCAATAGAGTTTAGCACTGCTCCAACTACCTTCAGTACTGGAGCTATTCCTGCTGTTCCAGATGCCACTGAGAAACAAAATCAGCCTGCATCCTCAGATCCTAATGCTCCTGACGATGCTTCTGATGAAAATCAATCACAAGATGCTTCCGATGGAAATCAAGAAAGTCAACATGTAAATAATGGTGCTTCTATCTGGAAGTGGATAATTATTATTCTTCTTCTGCTGGCTATTATTATCATAATTCTTTTATACATTATGCGAAAACGAGCCGCAAAAGTAATAGGCCCCTGGAAGACAGGAATAAGTGGACAGTTGCGGAAAGCATTTATAACAGGGGTTCCCAAGTTGAATAGAGCAGAATTAGAGACAGCCTGTGAAGATTTTAGCAATATTGTTATTGATTCTTATGCCGAGTGCACCATCTACAAAGGAACATTGTCTAGTGGAGTTGAGATTGCTGTAGTTTCTACTCTAATTACTTCTTCTAAGAATTGGTCAAAGAGCATGGAGATAAGATACCGCAAAAAGATTGATAATTTGTCTCGCATAAATCATAAGAACTTTATTAATCTTATCGGCTACTGCGAAGAAGAAGAACCATTCACTAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAAACTTATTTGAGCATTTACATGTTTCGCATTTGGAACGTATTGATTGGAGTGCAAGGGTAAAGATTATCATGGGGGTTGCGTATTGCCTTCAATACATGCACCATGACTTAAATCCGCCTATGGCACAGAGCAAGCTAGCTTCAAATATGATATTTTTAACAGATGATTTTTCTGCTAAGATTGCAGAGGTTACTTTTAGACATATTGTGTCACCAGAGAGCTTGGGTGATTCAAATAAATCTGATGATGGGCCATCCGACAAGAATATTGAAACCAACGTTTACAAATTTGGAGAGTTATTGCTGGAAATCATCTCAGGGAAATTACCTTACTCGGAAGAACATGGCAACCTAGTGGACTGGGCTGCTAAGTACATAAACGAGAAAACAAACCTCAAAGATTTGGTGGATCCCAGCCTCGAATGTTTCAAGGAGAACGAACTTCATTGCATTTGTGATGTGATCCAAGACTGTATCAAACCTGATGTAAAGTCAAGACCAACAATGAGGGACGTGACTTCCAAATTAAGGGAAGTGCTTGGTTTGTCACCTGAGCAAGTGGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCCTGTCAGTGGAGACGACTTAA 1893 0.3967 MELRWNTFGFCLRIYIFLFSLWGIRDCWSVNDEGLALLAFQARITSDPFNALVNWNPNDCDPCGWLGVHCVDGKVQVLDLKGLSLEGTLAPELGRLNHLNSIVLCKNNFSGAIPKELGDLPKLELLDLRENNLSGNIPAEIGNMSLLKHLFKLGKTSSHGNEKDYCDILPSSDVPKIAQNVPEIVSSTRRKLLQSSGNNLAAVPFDDKTPIEFSTAPTTFSTGAIPAVPDATEKQNQPASSDPNAPDDASDENQSQDASDGNQESQHVNNGASIWKWIIIILLLLAIIIIILLYIMRKRAAKVIGPWKTGISGQLRKAFITGVPKLNRAELETACEDFSNIVIDSYAECTIYKGTLSSGVEIAVVSTLITSSKNWSKSMEIRYRKKIDNLSRINHKNFINLIGYCEEEEPFTRMLVFEYAPNGNLFEHLHVSHLERIDWSARVKIIMGVAYCLQYMHHDLNPPMAQSKLASNMIFLTDDFSAKIAEVTFRHIVSPESLGDSNKSDDGPSDKNIETNVYKFGELLLEIISGKLPYSEEHGNLVDWAAKYINEKTNLKDLVDPSLECFKENELHCICDVIQDCIKPDVKSRPTMRDVTSKLREVLGLSPEQVVPRLSPLWWAELEILSVETT 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00006 630 Gene3D Transferase(Phosphotransferase) domain 1 420 609 - -
Vium1339g00006 630 MobiDBLite consensus disorder prediction 233 266 - -
Vium1339g00006 630 PANTHER PROTEIN MALE DISCOVERER 2 14 628 - -
Vium1339g00006 630 ProSiteProfiles Protein kinase domain profile. 298 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1339g00006 630 Gene3D Ribonuclease Inhibitor 29 222 IPR032675 -
Vium1339g00006 630 FunFam Inactive receptor-like serine/threonine-protein kinase 310 419 - -
Vium1339g00006 630 Pfam Protein tyrosine and serine/threonine kinase 350 599 IPR001245 GO:0004672|GO:0006468
Vium1339g00006 630 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vium1339g00006 630 MobiDBLite consensus disorder prediction 232 266 - -
Vium1339g00006 630 SUPERFAMILY L domain-like 29 151 - -
Vium1339g00006 630 SUPERFAMILY Protein kinase-like (PK-like) 348 599 IPR011009 -
Vium1339g00006 630 FunFam Leucine-rich repeat receptor-like kinase 34 153 - -
Vium1339g00006 630 Gene3D Phosphorylase Kinase; domain 1 311 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00006 Vium-Chr1339 17747 23302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00006 27 604 Receptor kinase-like Gene Family AT2G42290 26.260 1.27e-43 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vium1339g00006 PK_Tyr_Ser-Thr 1.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00006 - - vun:114189247 1090.49