Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1339g00002 ATGTCAGAAGGACATGAGATTCATAACAATGAGGAAATTTCATCTGGATGTTCCCAGAAGTGCTCTTCATTTGACTTGAATGCAGAAGCTTGCAGTGACGATAACACTAATGGTAATACAGAAGATGGGTATGAGCTCACAACAAACGAGAATAATGTTGAGAAAGTCAACGACGAGGGAACTTCAGGAAATGGAAGTAGCATTTCTAGAGAAGGAAATGCCAGAAGAGGAACTGTGAGACAATATGTTAGATCCAAGATGCCTCGGCTTCGGTGGACTCCTGAACTTCATCATTCATTTGTGCATGTTGTTGAAAGACTTGGTGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTGCAAGGACTCAGCATTGCTCACGTCAAGAGCCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCAAACGTATAAGTGGAATCAAAACCAAAAGTTACGTAGGTCTGTGATACTGCATGAGTCCATGAATCCTCAACAACATCTAAAGATGGGGAATGGTGGAATCATTCTGGCAACTCAATTCAACAAACATTGTCATTTTCCAAGTCTCGTGGACACACCCTTTCCCTTGTCACCATCCCATACAAATGACACTGATTCAAGGCAGCAGCAATGGTACATCAATCATCAAACTTTTAGAAAATCAATAGCTTCTGGCCATATTCAGGCAAAGGATACAACTACGAGACCAAGCAAATTGCTTGAAGAGAAAAGCTGGCTTCCGTTAGAAATTATAAGCAATCATCAATCCAAGTTCCAGAAGTTACCTGCCACTGTAGCTCCAAAAAATTATGGATCACAAGCAGTTCAGCTAGCTGAATGGAGCTTCGTGAACAAAACAAGCGTCACAGAATATTTATCGAACAAATCCAATGAACCTCGCAACTATTCCAACAGTTTAAAGCTACAATTTGATCCACCATTTCGGATTAAGAAAGACGAACAAGAATTACCTAATTTGCAACTGGGTTTGAGTTACACAATTGCAAGCGATGGTGACAAGATGGATCATTATAAAGAAACCCAAGAAATCAGCACCAAGCTTTCACTTTCTTAA 1110 0.4081 MSEGHEIHNNEEISSGCSQKCSSFDLNAEACSDDNTNGNTEDGYELTTNENNVEKVNDEGTSGNGSSISREGNARRGTVRQYVRSKMPRLRWTPELHHSFVHVVERLGGQERATPKLVLQLMNVQGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYKWNQNQKLRRSVILHESMNPQQHLKMGNGGIILATQFNKHCHFPSLVDTPFPLSPSHTNDTDSRQQQWYINHQTFRKSIASGHIQAKDTTTRPSKLLEEKSWLPLEIISNHQSKFQKLPATVAPKNYGSQAVQLAEWSFVNKTSVTEYLSNKSNEPRNYSNSLKLQFDPPFRIKKDEQELPNLQLGLSYTIASDGDKMDHYKETQEISTKLSLS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1339g00002 369 Gene3D - 87 144 - -
Vium1339g00002 369 MobiDBLite consensus disorder prediction 33 80 - -
Vium1339g00002 369 Pfam Myb-like DNA-binding domain 90 140 IPR001005 -
Vium1339g00002 369 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 143 IPR006447 GO:0003677
Vium1339g00002 369 MobiDBLite consensus disorder prediction 33 74 - -
Vium1339g00002 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 62 190 IPR046955 GO:0003700
Vium1339g00002 369 SUPERFAMILY Homeodomain-like 86 142 IPR009057 -
Vium1339g00002 369 FunFam Myb family transcription factor 86 144 - -
Vium1339g00002 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 144 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1339g00002 Vium-Chr1339 106 4641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1339g00002 79 149 G2-like Transcription Factor Family AT2G42660 74.648 2.68e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium1339g00002 Myb_DNA-binding 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1339g00002 - - vun:114187451 645.58