Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13398g00002 ATGGCATTTGCAGGAACAACTCAGAAATGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTAACTGCGGATAATCGAGTGTTCCACAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTCGATCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGACAAAACTGGCGAAGAGAAACCTGCAGCAACCAAGGTCTTGAATATGTTTGGTGGAACCAGAGACAAATGTGCTGGTTGTCAGAAAACAGTGTATCCCACTGAAAAGGTGACGGTGAATGGAACTCCTTATCATAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCTAATTACATTGCACACGATGGAAAACTCTACTGCAAACACCATCACATTCAACTGATCAAGGAGAAGGGAAATTTAAGCCAGCTTGAAGGTGACAATGAGAAGAGTACAATTCAAGAGAAAACCAACGGGGAAGTAGTTGCAGCTGAGACATGA 591 0.423 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPDKTGEEKPAATKVLNMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHDGKLYCKHHHIQLIKEKGNLSQLEGDNEKSTIQEKTNGEVVAAET 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13398g00002 196 Pfam LIM domain 109 163 IPR001781 -
Vium13398g00002 196 Pfam LIM domain 10 64 IPR001781 -
Vium13398g00002 196 MobiDBLite consensus disorder prediction 173 196 - -
Vium13398g00002 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Vium13398g00002 196 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vium13398g00002 196 Gene3D Cysteine Rich Protein 4 74 - -
Vium13398g00002 196 Gene3D Cysteine Rich Protein 104 173 - -
Vium13398g00002 196 SMART lim_4 9 61 IPR001781 -
Vium13398g00002 196 SMART lim_4 108 160 IPR001781 -
Vium13398g00002 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vium13398g00002 196 PANTHER OS06G0237300 PROTEIN 4 93 - -
Vium13398g00002 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vium13398g00002 196 FunFam LIM domain and actin-binding 1 103 173 - -
Vium13398g00002 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Vium13398g00002 196 CDD LIM1_SF3 6 68 - -
Vium13398g00002 196 CDD LIM2_SF3 109 169 - -
Vium13398g00002 196 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vium13398g00002 196 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Vium13398g00002 196 FunFam LIM domain and actin-binding 1 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13398g00002 Vium-Chr13398 4852 6987 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vium13398g00002 LIM 2.6e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13398g00002 K09377 - gmx:100305720 402.519