Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13398g00001 ATGGCATTTGCAGGAACAACTCAGAAATGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTAACTGCGGATAATCGAGTGTTCCACAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTCGATCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGACAAAACTGGCGAAGAGGTAATCATTTTTAAATCTTCATGCCTACTAATGCACAATAAAACAGGTTAA 324 0.4012 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPDKTGEEVIIFKSSCLLMHNKTG 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13398g00001 107 Pfam LIM domain 10 64 IPR001781 -
Vium13398g00001 107 FunFam LIM domain and actin-binding 1 4 74 - -
Vium13398g00001 107 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vium13398g00001 107 CDD LIM1_SF3 6 68 - -
Vium13398g00001 107 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vium13398g00001 107 Gene3D Cysteine Rich Protein 4 74 - -
Vium13398g00001 107 SMART lim_4 9 61 IPR001781 -
Vium13398g00001 107 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vium13398g00001 107 PANTHER OS06G0237300 PROTEIN 4 89 - -
Vium13398g00001 107 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13398g00001 Vium-Chr13398 1487 2632 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium13398g00001 LIM 8.6e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13398g00001 K09377 - gmx:100305720 194.512